View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_53 (Length: 246)
Name: NF18412_low_53
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 47456919 - 47456700
Alignment:
| Q |
20 |
ttgagttcctcaatgtcatctaaattatttataggtacaagcaagcaggtcatcaacatcttagctttgttctgcaccctcatataaacaacatgaacta |
119 |
Q |
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| T |
47456919 |
ttgagttcctcaatgtcatctaaattatttataggtacaagcaagcaggtcatcaacatcttagctttgttctgcaccctcacataaacaacatgaacta |
47456820 |
T |
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| Q |
120 |
ctgcagaatgggagaatcgttgctggaacaagaaagagtctatcattttgt-ttttaagtctttggtccttgttttatcccatataaagctatcttcagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456819 |
ctgcagaatgggagaatcgttgctggaacaagaaagagtctatcattttgttttttaagtctttggtccttgttttatcccatataaagctatcttcagc |
47456720 |
T |
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| Q |
219 |
ctatacaccatgcctttgct |
238 |
Q |
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|||||||||||| ||||||| |
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| T |
47456719 |
ctatacaccatgtctttgct |
47456700 |
T |
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