View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_56 (Length: 237)
Name: NF18412_low_56
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6185194 - 6184977
Alignment:
| Q |
1 |
agatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185194 |
agatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaa |
6185095 |
T |
|
| Q |
101 |
ctaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6185094 |
ctaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattattatgggtgaatttga |
6184995 |
T |
|
| Q |
201 |
ttatggatacattaggtg |
218 |
Q |
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|||||||||||||||||| |
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| T |
6184994 |
ttatggatacattaggtg |
6184977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4236070 - 4235853
Alignment:
| Q |
1 |
agatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236070 |
agatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaa |
4235971 |
T |
|
| Q |
101 |
ctaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaa |
200 |
Q |
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| T |
4235970 |
ttaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatgggtgaatttga |
4235871 |
T |
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| Q |
201 |
ttatggatacattaggtg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
4235870 |
ttatggatacattaggtg |
4235853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 30441398 - 30441450
Alignment:
| Q |
163 |
accattaacagcagttcaattattatgggtgaatttaattatggatacattag |
215 |
Q |
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|||||||| | ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30441398 |
accattaatatcagttcaattattatgggtgaatttgattatggatacattag |
30441450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19592953 - 19592829
Alignment:
| Q |
1 |
agatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19592953 |
agatattgttatattagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---- |
19592858 |
T |
|
| Q |
101 |
ctaacagtgaatgtggcagcacttgttatcaatt |
134 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
19592857 |
-----agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 38356971 - 38356889
Alignment:
| Q |
44 |
gttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgt |
126 |
Q |
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|
||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
38356971 |
gttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgt |
38356889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 19592824 - 19592786
Alignment:
| Q |
158 |
gaagtaccattaacagcagttcaattattatgggtgaat |
196 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |
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| T |
19592824 |
gaagtaccattaataacagttcaattattatgggtgaat |
19592786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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