View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_58 (Length: 236)
Name: NF18412_low_58
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34729114 - 34729335
Alignment:
| Q |
1 |
aacagaaatgagatgaaaataattcccaaacaggctctacaatgttcaaaattaccactgcactttgacatatgacaaataaaatgacttttagtatgat |
100 |
Q |
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| T |
34729114 |
aacagaaatgagatgaaaataattcccaaacgggctctacaatgttcaaaattaccactgcactttgacatatgacaaataaaatgacttttagtatgat |
34729213 |
T |
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| Q |
101 |
cagattaagctcaccttttttgaaaatgcagttaagtgagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatg |
200 |
Q |
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| T |
34729214 |
cagattaagctcaccttttttgaaaatgcagttaagtgagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatg |
34729313 |
T |
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| Q |
201 |
gaatctagcttgcctataaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34729314 |
gaatctagcttgcctataaatt |
34729335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 34719742 - 34719825
Alignment:
| Q |
139 |
agataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatggaatctagcttgcctataaatt |
222 |
Q |
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| T |
34719742 |
agatagtaaacatagtcattacaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatt |
34719825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 34725200 - 34725249
Alignment:
| Q |
151 |
tagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatg |
200 |
Q |
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| T |
34725200 |
tagttattacaacgaaaatttaggtcctacaaataagaaatcgtgagatg |
34725249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 34725032 - 34725095
Alignment:
| Q |
41 |
aatgttcaaaattaccactgcactttgacatatgacaaataaaatgacttttagtatgatcaga |
104 |
Q |
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| T |
34725032 |
aatgttcaaatttagaactgcactttgctatatgacaaagaaaatgatttttggtatgatcaga |
34725095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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