View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_6 (Length: 567)
Name: NF18412_low_6
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 122 - 519
Target Start/End: Original strand, 11050330 - 11050731
Alignment:
| Q |
122 |
caaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatagttttgtt |
221 |
Q |
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| T |
11050330 |
caaaaaagaaaatgaaggtatacaaacaaaagtataggtgataagaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatatttttgtt |
11050429 |
T |
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| Q |
222 |
tgtgtggaaaaattatgttggaatagagaagaaacatatgcatttaaattatagtggtaagaggtagcactgaatgagaattttaattttaatcatcttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
11050430 |
tgtgtggaaaaattatgttggaatagagaagaaacatatgcatttaaattatagtggtaagagggagcactgaatgagaattttaattttaattatcttc |
11050529 |
T |
|
| Q |
322 |
gcattcnnnnnnnntaatgcagagtcaagtcaattgatacaacagacaaagaagcacgacacatgcatgggagcaaaagtgaatcacaaaattcacaatg |
421 |
Q |
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| T |
11050530 |
gcattcaaaaagattaatgcagagtcaagtcaattgatacaacagacaaagaagcacgacacatgcatgggagcaaaagtgaatcacaaaattcacaatg |
11050629 |
T |
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| Q |
422 |
ttatatggact-----ttgatgannnnnnngtttggtagataaaagaaacgacaaagttattaaaaacttacatacacaaatgaaatagtcggagttcaa |
516 |
Q |
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| T |
11050630 |
ttatatggactttttattgatgatatttttatttggtagataaaagaaac-acaaagttgttaaaaactcacatacacaaatgaaatagtcggaattcaa |
11050728 |
T |
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| Q |
517 |
aca |
519 |
Q |
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||| |
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| T |
11050729 |
aca |
11050731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 10218537 - 10218690
Alignment:
| Q |
135 |
gaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatagttttgtttgtgtggaaaaat |
234 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
10218537 |
gaagggatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatata-ttttgtttgtgtggaaaaat |
10218635 |
T |
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| Q |
235 |
tatgttggaatagagaagaaacatatgcatttaaattatagtggtaagaggtagca |
290 |
Q |
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| T |
10218636 |
tatg-tggaacagagaagaagcatatgcgttcaaattctagtggtaagagctagca |
10218690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 11050251 - 11050334
Alignment:
| Q |
16 |
gtatattgtttctttgaaattaagcaatgcaaaatgatctgtttgatttgctaatgcttgtgccacaattttgtttgggcaaaa |
99 |
Q |
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| T |
11050251 |
gtatattgtttctttgaatttaatcaatgcaaaatgatctgtttggtttcctaatgcttgtgcaacaactctgtttgggcaaaa |
11050334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 10562855 - 10562648
Alignment:
| Q |
18 |
atattgtttctttgaaattaagcaatgcaaaatgatctgtttgatttgctaat---gcttgtgccacaattttgtttgggcaaaaccacattaaatttaa |
114 |
Q |
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| T |
10562855 |
atattgattctttgaatttgagcaatgctaaatgatctgtttggtttcctaatgcagccactgccaccattttgtttgtggtaaaccacattaaatttaa |
10562756 |
T |
|
| Q |
115 |
ggaaaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaa--ggtttatgctgtat |
212 |
Q |
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| T |
10562755 |
ggtaaaaagaaaaagaagatgaaggtat------aaaagtatagatgacaacgaagaaaaagacataatttggtttagaagaaagtggtttatgctgttt |
10562662 |
T |
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| Q |
213 |
agttttgtttgtgt |
226 |
Q |
| |
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|||||||||||||| |
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| T |
10562661 |
agttttgtttgtgt |
10562648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 10609538 - 10609332
Alignment:
| Q |
18 |
atattgtttctttgaaattaagcaatgcaaaatgatctgtttgatttgctaatgcttgtgccacaattttgtttgggcaaaaccacattaaatttaagga |
117 |
Q |
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|||||| ||||||||| |||||||||| |||| ||| ||||| ||| ||||||| ||||||| ||||||||| | ||||||||||| |||||||| |
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| T |
10609538 |
atattgattctttgaatttaagcaatgacaaataatcagtttggtttcctaatgccactgccacagttttgtttgtaccaaaccacattatatttaaggt |
10609439 |
T |
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| Q |
118 |
aaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaa--aggtttatgctgtatagt |
215 |
Q |
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| T |
10609438 |
aaacagaaaaagaagatgaaggtgtatgtacataagtatccttgacaagcaagaaaatgacttcattttgtttaggacaaagaggtttatgataaatagt |
10609339 |
T |
|
| Q |
216 |
tttgttt |
222 |
Q |
| |
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||||||| |
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| T |
10609338 |
tttgttt |
10609332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 10218761 - 10218831
Alignment:
| Q |
447 |
gtttggtagataaaagaaacgac---aaagttattaaaaacttacatacacaaatgaaatagtcggagttc |
514 |
Q |
| |
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|||||||| |||||||||||||| || | ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
10218761 |
gtttggtaaataaaagaaacgacgacaacgctattaaaaactcacatacacaaatgaaatagtcgaagttc |
10218831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 12930037 - 12929896
Alignment:
| Q |
82 |
aattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttc |
181 |
Q |
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|||||||||||| |||||||||||||||||||||| || | ||| || | |||||||||| |||||| ||||||||| |||||||||| |||| |
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| T |
12930037 |
aattttgtttggacaaaaccacattaaatttaaggtaatcataaaaaggagatgaaggtat------aaaagtgtaggtgacaacaaagaaaaagacttc |
12929944 |
T |
|
| Q |
182 |
a-ttcggtttaggagaaa--ggtttatgctgtatagttttgtttgtgt |
226 |
Q |
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| T |
12929943 |
attttggtttagaagaaagtggtttatgctatttagttttgtttgtgt |
12929896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 12955561 - 12955420
Alignment:
| Q |
82 |
aattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttc |
181 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| || | |||| || | |||||||||| |||||| |||||||| ||||||||| |||| |
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| T |
12955561 |
aattttgtttggaccaaaccacattaaatttaaggtaagcaaaaaaaggagatgaaggtat------aaaagtggaggtgacaacaaagaaaaatacttc |
12955468 |
T |
|
| Q |
182 |
a-ttcggtttaggagaaa--ggtttatgctgtatagttttgtttgtgt |
226 |
Q |
| |
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| || ||||||| ||||| |||||||||| | ||||||||||||||| |
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| T |
12955467 |
attttggtttagaagaaaatggtttatgctatttagttttgtttgtgt |
12955420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 12955839 - 12955698
Alignment:
| Q |
82 |
aattttgtttgggcaaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttc |
181 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| || | |||| || | |||||||||| |||||| |||||||| ||||||||| |||| |
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| T |
12955839 |
aattttgtttggaccaaaccacattaaatttaaggtaagcaaaaaaaggagatgaaggtat------aaaagtggaggtgacaacaaagaaaaatacttc |
12955746 |
T |
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| Q |
182 |
a-ttcggtttaggagaaa--ggtttatgctgtatagttttgtttgtgt |
226 |
Q |
| |
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| || ||||||| ||||| |||||||||| | ||||||||||||||| |
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| T |
12955745 |
attttggtttagaagaaaatggtttatgctatttagttttgtttgtgt |
12955698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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