View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_61 (Length: 227)
Name: NF18412_low_61
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 27645688 - 27645853
Alignment:
| Q |
1 |
actcaacgcatgcattcaacctgatgccacaatttgcgacttctatatttttacggtaaaactggctcaagagaacggaaaagaaaatggagatcctagt |
100 |
Q |
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| T |
27645688 |
actcaacgcacgcattcaacctgatgccacaatttgcgacttctatattttcacggtaaaactggctcaagataacggaaaagaaaatggagatcctagt |
27645787 |
T |
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| Q |
101 |
tcaaactcaaacggatgagaaattaaaaattaatttaataactagttactaagattccttttaaat |
166 |
Q |
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| T |
27645788 |
tcaaactcaaacgaatgagaaattaaaaattaatttgataagtaattactaacattcctttcaaat |
27645853 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 27555501 - 27555598
Alignment:
| Q |
60 |
aactggctcaagagaacggaaaagaaaatggagatcctagttcaaactcaaacggatgagaaattaaaaattaatttaataactagttactaagattc |
157 |
Q |
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| T |
27555501 |
aactggctcgagctaacggaaaagaaattggagattctagttcaaactcagacgaatgaaaaattaaaaattaatttaataaccagttactaacattc |
27555598 |
T |
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