View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_low_64 (Length: 219)

Name: NF18412_low_64
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_low_64
NF18412_low_64
[»] chr6 (11 HSPs)
chr6 (8-203)||(9815764-9815948)
chr6 (7-52)||(6274022-6274067)
chr6 (8-48)||(10668970-10669010)
chr6 (8-48)||(12174317-12174357)
chr6 (8-48)||(4337983-4338023)
chr6 (8-47)||(34573280-34573319)
chr6 (18-48)||(33344793-33344823)
chr6 (18-48)||(35122053-35122083)
chr6 (8-45)||(34969396-34969433)
chr6 (20-48)||(13229304-13229332)
chr6 (7-51)||(33607152-33607196)
[»] chr2 (9 HSPs)
chr2 (8-51)||(40877017-40877060)
chr2 (8-45)||(5163792-5163829)
chr2 (8-45)||(28556697-28556734)
chr2 (8-48)||(4206654-4206694)
chr2 (8-47)||(17271355-17271394)
chr2 (8-47)||(28226838-28226877)
chr2 (17-45)||(34345898-34345926)
chr2 (8-44)||(34909431-34909467)
chr2 (8-44)||(36506964-36507000)
[»] chr7 (10 HSPs)
chr7 (7-45)||(26914434-26914472)
chr7 (8-48)||(15134543-15134583)
chr7 (8-48)||(21292822-21292862)
chr7 (8-48)||(30095852-30095892)
chr7 (8-48)||(40351860-40351900)
chr7 (9-48)||(37996506-37996545)
chr7 (7-45)||(31329678-31329716)
chr7 (8-42)||(49164858-49164892)
chr7 (8-48)||(9429428-9429468)
chr7 (8-44)||(22318755-22318791)
[»] chr8 (13 HSPs)
chr8 (8-48)||(4350763-4350803)
chr8 (8-48)||(13580450-13580490)
chr8 (8-48)||(28376654-28376694)
chr8 (8-44)||(12181824-12181860)
chr8 (8-44)||(12426252-12426288)
chr8 (8-43)||(21348446-21348481)
chr8 (8-48)||(13236160-13236201)
chr8 (15-48)||(26835693-26835726)
chr8 (10-51)||(38075780-38075821)
chr8 (8-44)||(7255401-7255437)
chr8 (8-48)||(22930318-22930358)
chr8 (8-48)||(34142021-34142061)
chr8 (8-44)||(39612709-39612745)
[»] chr5 (8 HSPs)
chr5 (8-48)||(7887279-7887319)
chr5 (8-48)||(10325724-10325764)
chr5 (8-45)||(502805-502841)
chr5 (8-45)||(16569392-16569429)
chr5 (8-45)||(20870634-20870671)
chr5 (12-45)||(32257781-32257814)
chr5 (8-48)||(12263740-12263780)
chr5 (9-45)||(39542410-39542446)
[»] chr4 (10 HSPs)
chr4 (8-48)||(23870044-23870084)
chr4 (15-67)||(38087637-38087689)
chr4 (10-48)||(47059687-47059725)
chr4 (10-48)||(47082077-47082115)
chr4 (8-48)||(7853292-7853332)
chr4 (15-49)||(25779741-25779775)
chr4 (8-52)||(3643237-3643280)
chr4 (8-48)||(5627493-5627533)
chr4 (8-44)||(6137205-6137241)
chr4 (36-88)||(32554588-32554640)
[»] chr1 (9 HSPs)
chr1 (8-50)||(35204307-35204349)
chr1 (8-44)||(1240428-1240464)
chr1 (8-48)||(8246812-8246852)
chr1 (8-48)||(23897987-23898027)
chr1 (12-47)||(3265561-3265596)
chr1 (8-48)||(40859-40899)
chr1 (12-48)||(1153820-1153856)
chr1 (8-48)||(23935185-23935225)
chr1 (8-44)||(29664192-29664228)
[»] chr3 (7 HSPs)
chr3 (8-48)||(2758072-2758112)
chr3 (8-48)||(11383588-11383628)
chr3 (7-51)||(18257977-18258021)
chr3 (16-51)||(33510197-33510232)
chr3 (8-50)||(17713271-17713313)
chr3 (8-50)||(19014500-19014542)
chr3 (8-48)||(8266687-8266727)
[»] scaffold0531 (1 HSPs)
scaffold0531 (8-47)||(9699-9738)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 9815764 - 9815948
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtcctgggctaccgcccctctcgtccaccctcagggccaccgctactggtccctaagatg 107  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  9815764 tatatagtattaactactaagtaaaaataataattttggtgtcctaggctaccgcccctcccgtccaccctcagggccaccgctgctagtccctaagatg 9815863  T
Q  108 atttgagatactacaaagcaacgttctcttacatcaaagacaatttgggagaaaataaattcttagagggggtgagctctatctagggcaggcaag 203  Q
    |||||||||||||||||||||||||||||||||||||            | |||||||||||||||||||||||||||||||||||||||||||||    
T  9815864 atttgagatactacaaagcaacgttctcttacatcaa-----------tataaaataaattcttagagggggtgagctctatctagggcaggcaag 9815948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 6274022 - 6274067
Alignment:
Q  7 gtatataatactaactactaagtaaaaataataattttggtgtcct 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  6274022 gtatataatactaactactaagttaaaataataattttggtgtcct 6274067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 10668970 - 10669010
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10668970 tatataatactaactaataagtaaaaataataattttggtg 10669010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 12174357 - 12174317
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  12174357 tatatagtactaactactaagtaaaaataataattttggtg 12174317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4337983 - 4338023
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  4337983 tatatagtactaactactaagtaaaagtaataattttggtg 4338023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 34573280 - 34573319
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggt 47  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  34573280 tatataatattaactactaaataaaaataataattttggt 34573319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 33344823 - 33344793
Alignment:
Q  18 taactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||||||||||||||||||    
T  33344823 taactactaagtaaaaataataattttggtg 33344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 35122053 - 35122083
Alignment:
Q  18 taactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||||||||||||||||||    
T  35122053 taactactaagtaaaaataataattttggtg 35122083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 34969433 - 34969396
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  34969433 tatatagtaccaactactaagtaaaaataataattttg 34969396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 13229332 - 13229304
Alignment:
Q  20 actactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||||||||||||||||    
T  13229332 actactaagtaaaaataataattttggtg 13229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 33607152 - 33607196
Alignment:
Q  7 gtatataatactaactactaagtaaaaataataattttggtgtcc 51  Q
    ||||||| || |||||| ||| |||||||||||||||||||||||    
T  33607152 gtatatactattaactattaaataaaaataataattttggtgtcc 33607196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 40877017 - 40877060
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtcc 51  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  40877017 tatataatactaactaccaagtaaaaataataattttggtgtcc 40877060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 5163829 - 5163792
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    |||||| |||||||||||||||||||||||||||||||    
T  5163829 tatatagtactaactactaagtaaaaataataattttg 5163792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 28556697 - 28556734
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28556697 tatatagtactaactactaagtaaaaataataattttg 28556734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4206654 - 4206694
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  4206654 tatatattactaactactaagtaaatataataattttggtg 4206694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 17271355 - 17271394
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggt 47  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  17271355 tatattatactgactactaagtaaaaataataattttggt 17271394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 28226838 - 28226877
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggt 47  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  28226838 tatataatattaactactaaataaaaataataattttggt 28226877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 34345926 - 34345898
Alignment:
Q  17 ctaactactaagtaaaaataataattttg 45  Q
    |||||||||||||||||||||||||||||    
T  34345926 ctaactactaagtaaaaataataattttg 34345898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 34909431 - 34909467
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  34909431 tatatattactaactagtaagtaaaaataataatttt 34909467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 36506964 - 36507000
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||||||||||||||||| |||||||||| |||||    
T  36506964 tatataatactaactactaattaaaaataatgatttt 36507000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 26914434 - 26914472
Alignment:
Q  7 gtatataatactaactactaagtaaaaataataattttg 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26914434 gtatataatactaactactaagtaaaaataataattttg 26914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 15134543 - 15134583
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  15134543 tatatagtactagctactaagtaaaaataataattttggtg 15134583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 21292822 - 21292862
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21292822 tatatgatattaactactaagtaaaaataataattttggtg 21292862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 30095852 - 30095892
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  30095852 tatatattaataactactaagtaaaaataataattttggtg 30095892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 40351860 - 40351900
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  40351860 tatataatactaactactgagtaaaaataataactttggtg 40351900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37996545 - 37996506
Alignment:
Q  9 atataatactaactactaagtaaaaataataattttggtg 48  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  37996545 atatagtattaactactaagtaaaaataataattttggtg 37996506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 31329678 - 31329716
Alignment:
Q  7 gtatataatactaactactaagtaaaaataataattttg 45  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  31329678 gtatataatactaattacgaagtaaaaataataattttg 31329716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 49164858 - 49164892
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatt 42  Q
    |||||| ||||||||||||||||||||||||||||    
T  49164858 tatatactactaactactaagtaaaaataataatt 49164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 9429428 - 9429468
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||| ||| |||||||| |||||||||||    
T  9429428 tatataatactaactattaaataaaaatactaattttggtg 9429468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 22318755 - 22318791
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  22318755 tatataatattaactactaaataaaaataataatttt 22318791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4350763 - 4350803
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  4350763 tatataatactaactactaaataaaaataataattttggtg 4350803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 13580450 - 13580490
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  13580450 tatataatactaactattaagtaaaaataataattttggtg 13580490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 28376694 - 28376654
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  28376694 tatatagtactaactactaagtaaaaataataattttggtg 28376654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 12181860 - 12181824
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12181860 tatataatactaattactaagtaaaaataataatttt 12181824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 12426288 - 12426252
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12426288 tatataatactaattactaagtaaaaataataatttt 12426252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 21348446 - 21348481
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattt 43  Q
    |||||||||||||||||||||||||||||| |||||    
T  21348446 tatataatactaactactaagtaaaaataagaattt 21348481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 13236201 - 13236160
Alignment:
Q  8 tatataatactaactactaagta-aaaataataattttggtg 48  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  13236201 tatatagtactaactactaagtaaaaaataataattttggtg 13236160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 26835693 - 26835726
Alignment:
Q  15 tactaactactaagtaaaaataataattttggtg 48  Q
    ||||||||| ||||||||||||||||||||||||    
T  26835693 tactaactattaagtaaaaataataattttggtg 26835726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38075780 - 38075821
Alignment:
Q  10 tataatactaactactaagtaaaaataataattttggtgtcc 51  Q
    ||||| |||||| ||||||||||||||||||||||| |||||    
T  38075780 tataacactaacaactaagtaaaaataataattttgatgtcc 38075821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 7255437 - 7255401
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||||||||||| |||||||||||||| |||||||    
T  7255437 tatataatactaaccactaagtaaaaatattaatttt 7255401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 22930358 - 22930318
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||| ||||||||||| ||||||||||||    
T  22930358 tatatagtactaactattaagtaaaaattataattttggtg 22930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 34142061 - 34142021
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  34142061 tatatagtactaactactaaataaaaataatagttttggtg 34142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 39612709 - 39612745
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||||||||||||| |||||||||||||| |||||    
T  39612709 tatataatactaactagtaagtaaaaataatcatttt 39612745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 7887279 - 7887319
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7887279 tatatagtactaactactaagtaaaaataataattttggtg 7887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 10325724 - 10325764
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  10325724 tatatagtactaacaactaagtaaaaataataattttggtg 10325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 502841 - 502805
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  502841 tatataatactaact-ctaagtaaaaataataattttg 502805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 16569392 - 16569429
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    ||||||||| || |||||||||||||||||||||||||    
T  16569392 tatataatattacctactaagtaaaaataataattttg 16569429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 20870671 - 20870634
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttg 45  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  20870671 tatatagtactaactactaaataaaaataataattttg 20870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 32257781 - 32257814
Alignment:
Q  12 taatactaactactaagtaaaaataataattttg 45  Q
    ||||||||||||||||||||||||||| ||||||    
T  32257781 taatactaactactaagtaaaaataattattttg 32257814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 12263740 - 12263780
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  12263740 tatatagtactaaccattaagtaaaaataataattttggtg 12263780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 39542446 - 39542410
Alignment:
Q  9 atataatactaactactaagtaaaaataataattttg 45  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  39542446 atatagtactaactactacgtaaaaataataattttg 39542410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 23870084 - 23870044
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  23870084 tatatagtactaactactaagtaaaaataataattttggtg 23870044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 38087689 - 38087637
Alignment:
Q  15 tactaactactaagtaaaaataataattttggtgtcctgggctaccgcccctc 67  Q
    ||||||||| |||||||||||||||||||||||| ||||| || |||||||||    
T  38087689 tactaactattaagtaaaaataataattttggtgccctggactgccgcccctc 38087637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 47059725 - 47059687
Alignment:
Q  10 tataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  47059725 tataatactaactaataagtaaaaataataattttggtg 47059687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 47082077 - 47082115
Alignment:
Q  10 tataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  47082077 tataatactaactaataagtaaaaataataattttggtg 47082115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 7853332 - 7853292
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  7853332 tatatagtactaactactaagtaaaaataataaatttggtg 7853292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 25779741 - 25779775
Alignment:
Q  15 tactaactactaagtaaaaataataattttggtgt 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  25779741 tactaactaataagtaaaaataataattttggtgt 25779775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 3643237 - 3643280
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtcct 52  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||    
T  3643237 tatatagtactaactactaagt-aaaataataattttgatgtcct 3643280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 5627533 - 5627493
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| |||||||||| | |||||||||||||||||||||    
T  5627533 tatatattactaactaccatgtaaaaataataattttggtg 5627493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 6137241 - 6137205
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  6137241 tatatattactaactactaaataaaaataataatttt 6137205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 32554588 - 32554640
Alignment:
Q  36 aataattttggtgtcctgggctaccgcccctctcgtccaccctcagggccacc 88  Q
    |||| |||||||| ||||||||| ||||||||  | |||||||||||||||||    
T  32554588 aatatttttggtgccctgggctatcgcccctcaagcccaccctcagggccacc 32554640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 35204307 - 35204349
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtc 50  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  35204307 tatataatactaattactaagtaaaaataataattttgatgtc 35204349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1240464 - 1240428
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1240464 tatatagtactaactactaagtaaaaataataatttt 1240428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 8246812 - 8246852
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  8246812 tatatagtactaactattaagtaaaaataataattttggtg 8246852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 23897987 - 23898027
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  23897987 tatatattactaactactaagtaaaaatgataattttggtg 23898027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 3265561 - 3265596
Alignment:
Q  12 taatactaactactaagtaaaaataataattttggt 47  Q
    |||||||||||| |||||||||||||||||||||||    
T  3265561 taatactaactattaagtaaaaataataattttggt 3265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 40859 - 40899
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  40859 tatatagtattaactacaaagtaaaaataataattttggtg 40899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1153820 - 1153856
Alignment:
Q  12 taatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||| |||||||||||||| |||||    
T  1153820 taatactaactactaaataaaaataataattgtggtg 1153856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 23935225 - 23935185
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  23935225 tatatattactaactactaagtaaaaatgttaattttggtg 23935185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 29664228 - 29664192
Alignment:
Q  8 tatataatactaactactaagtaaaaataataatttt 44  Q
    |||||| |||||| |||||||||||||||||||||||    
T  29664228 tatatagtactaattactaagtaaaaataataatttt 29664192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 2758112 - 2758072
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  2758112 tatatagtactaactactaattaaaaataataattttggtg 2758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 11383628 - 11383588
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  11383628 tatatattactaactactaaataaaaataataattttggtg 11383588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 18257977 - 18258021
Alignment:
Q  7 gtatataatactaactactaagtaaaaataataattttggtgtcc 51  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||    
T  18257977 gtatataatactaactattaagtaaaaataataaatttgatgtcc 18258021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 33510197 - 33510232
Alignment:
Q  16 actaactactaagtaaaaataataattttggtgtcc 51  Q
    |||||||||||||||||||||||||||||| |||||    
T  33510197 actaactactaagtaaaaataataattttgatgtcc 33510232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 17713313 - 17713271
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtc 50  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||    
T  17713313 tatataaaactaattactaagtaaaaataataattttgatgtc 17713271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 19014542 - 19014500
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtgtc 50  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||    
T  19014542 tatataaaactaattactaagtaaaaataataattttgatgtc 19014500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 8266687 - 8266727
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggtg 48  Q
    |||||||||||||||| || |||||||| ||||||||||||    
T  8266687 tatataatactaactattacgtaaaaatcataattttggtg 8266727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 9738 - 9699
Alignment:
Q  8 tatataatactaactactaagtaaaaataataattttggt 47  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  9738 tatatagtactaactactaaataaaaataataattttggt 9699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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