View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_66 (Length: 207)
Name: NF18412_low_66
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 50557227 - 50557395
Alignment:
| Q |
17 |
agcataggatagacaaatgtttatcatgaggatttacagtatacaaataaaaagttgcttaac-taacattaaaatnnnnnnnngtggcataatattaac |
115 |
Q |
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| T |
50557227 |
agcataggatagacaaatgtttatcatgaggatttacagtatacaaataaaaatttgcttaacattaaaataaaataaaaaa--gtggcataatattaac |
50557324 |
T |
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| Q |
116 |
tcaaaagatcaatcattt-aaaaaagaataccgataattcataattctggctagtgattactggaaacaat |
185 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50557325 |
tcaaaagatcaatcattttaaaaaagaataccgataattcataattctggctagtgaatactggaaacaat |
50557395 |
T |
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