View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_high_1 (Length: 732)
Name: NF18413_high_1
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 280 - 722
Target Start/End: Complemental strand, 39544258 - 39543817
Alignment:
| Q |
280 |
atcaatatcataattagtactaacctttagacgaacattcttcacccgtcagtcttatctttttattgcactgatgtgaataaattactcacaatagttt |
379 |
Q |
| |
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|||| ||||||||||||||| | | |||||||| |||||| | |||||||||||||||||||||||||||| |||||| ||||||||| ||||||| || |
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| T |
39544258 |
atcattatcataattagtaccagcgtttagacggacattcattacccgtcagtcttatctttttattgcaccgatgtggataaattacaaacaatagatt |
39544159 |
T |
|
| Q |
380 |
ttattaaattttaatttttaacgacttagttggtctagtggtgtaggtttgggaccactttgtatatagtatagattataaagtgttttaatcgtcattg |
479 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39544158 |
ttattaaattttaatttttaacgacttggttggtctagtggtgtaggtttgggaccgctttgtatatagtatagattataa-gtgttttaatcgtcattg |
39544060 |
T |
|
| Q |
480 |
ttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgt |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39544059 |
ttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattctgcaaacatgttccttgt |
39543960 |
T |
|
| Q |
580 |
atcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgcccacct |
679 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543959 |
atcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttatgaccccacgacgcccacct |
39543860 |
T |
|
| Q |
680 |
tccatacatccttcactttatgacatgtatgtccccatctctg |
722 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543859 |
tccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 39545013 - 39544742
Alignment:
| Q |
18 |
atgactaactccatgggtgaacctgagttactttgcaataatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545013 |
atgactaactccatgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgt |
39544914 |
T |
|
| Q |
118 |
ataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggtgaaaaaagatttattttattaacaaaacat |
217 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39544913 |
ataatccagatgaaactgttgaagggaagcttgttccaaagaagaaacatggtgtgcttgctgctcaggtgaaaaaagatttattttattaacaaaacat |
39544814 |
T |
|
| Q |
218 |
tttgttctcaagggaatattccaataggcaaagaattactataagcatgtactgttataataatcaatatca |
289 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
39544813 |
tttgttctcaagggaatattccaattggcaaagaattactataagcatgtattgttataataatcattatca |
39544742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 461 - 722
Target Start/End: Complemental strand, 39554097 - 39553836
Alignment:
| Q |
461 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
560 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |
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| T |
39554097 |
agtgttttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
39553998 |
T |
|
| Q |
561 |
cagcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttat |
660 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
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| T |
39553997 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
39553898 |
T |
|
| Q |
661 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
722 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39553897 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 39554327 - 39554158
Alignment:
| Q |
18 |
atgactaactccatgggtgaacctgagttactttgcaataatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554327 |
atgactaactccatgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgt |
39554228 |
T |
|
| Q |
118 |
ataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554227 |
ataatccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
39554158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 39587441 - 39587271
Alignment:
| Q |
21 |
actaactccatgggtgaacctgagttactttgcaataatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtata |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
39587441 |
actaactccatgggtgaacctgagctactttgcaataaccgtggtgtggattttgttgaagctgttgctgatgttgagttgcaatctctcgatttgtata |
39587342 |
T |
|
| Q |
121 |
atccagatgaaactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggtgaaa |
191 |
Q |
| |
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| ||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
39587341 |
agccagaggaaaccattgaagggaagcttgttccaaagaagaaatatggtgtacttgctgttcaggtgaaa |
39587271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 477 - 720
Target Start/End: Complemental strand, 39587191 - 39586948
Alignment:
| Q |
477 |
ttgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttcct |
576 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||| ||||| ||||||||||| || |
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|
| T |
39587191 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
39587092 |
T |
|
| Q |
577 |
tgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgccca |
676 |
Q |
| |
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||||||||||||||||||||| || | | ||||||||||||||||||||| ||| |||||||||||| | |||| ||| |||||||| ||| |||| |
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| T |
39587091 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacaccca |
39586992 |
T |
|
| Q |
677 |
ccttccatacatccttcactttatgacatgtatgtccccatctc |
720 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
39586991 |
ccttccatccatccttcactctatgacatgtacatccccatctc |
39586948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 17484912 - 17484768
Alignment:
| Q |
31 |
tgggtgaacctgagttactttgcaataatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatga |
130 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||||| || ||||||||||||||| |||||||||||||| | |||| |||||||| ||||| || ||||| |
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|
| T |
17484912 |
tgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgagcttcaatgcctcaatttttataaccctgatga |
17484813 |
T |
|
| Q |
131 |
aactgttgaagggaaacttgttccaaagaagaaacatggtgtgct |
175 |
Q |
| |
|
| |||||||||| || ||||||| |||||||| ||||| ||||| |
|
|
| T |
17484812 |
atctgttgaaggaaagtttgttcctaagaagaagcatggcgtgct |
17484768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 17507187 - 17507043
Alignment:
| Q |
31 |
tgggtgaacctgagttactttgcaataatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatga |
130 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||| || ||||||||||||||| ||||||||||||| | |||| |||||||| ||||| || ||||| |
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| T |
17507187 |
tgggtgaacctgagcttctttgtaataatcgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatga |
17507088 |
T |
|
| Q |
131 |
aactgttgaagggaaacttgttccaaagaagaaacatggtgtgct |
175 |
Q |
| |
|
| |||||||||| || ||||||| |||||||| ||||| ||||| |
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| T |
17507087 |
atctgttgaaggaaagtttgttcctaagaagaagcatggcgtgct |
17507043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 17503870 - 17503782
Alignment:
| Q |
506 |
tgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagat |
594 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| ||||| ||||| || ||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
17503870 |
tgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatcatgggccgagat |
17503782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 599
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
518 |
gtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcatgggccgagatagctc |
599 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| || || || ||| ||||||||||| | ||||||||||||||||| |||| |
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| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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