View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_high_15 (Length: 261)
Name: NF18413_high_15
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5886305 - 5886547
Alignment:
| Q |
1 |
catgacaaacttattcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctagacctt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5886305 |
catgacaaacttactcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctagacctt |
5886404 |
T |
|
| Q |
101 |
tcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtaaatttaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5886405 |
tcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtgaatttaacg |
5886504 |
T |
|
| Q |
201 |
aattcataaatgtgtcttcctctgtgttggaattccttgattt |
243 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5886505 |
aattcataaatgtgtcttcctctgtgttggagttccttgattt |
5886547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5848086 - 5848328
Alignment:
| Q |
1 |
catgacaaacttattcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctagacctt |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
5848086 |
catgacaaacttattcctattggacctttctcactgtcaactatatggaacatttcccaattcactgtcaaacctcacacaccttaccgacctacgcctt |
5848185 |
T |
|
| Q |
101 |
tcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtaaatttaacg |
200 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||| ||| |
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| T |
5848186 |
tctcataatgatttatatggttcaattccttcatacctttttacactcccatcattggagagaatttctcttgcatccaaccagtttagtaaatttgacg |
5848285 |
T |
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| Q |
201 |
aattcataaatgtgtcttcctctgtgttggaattccttgattt |
243 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||| |
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| T |
5848286 |
aattcataaatgtgtcttccaatgtgatggaattccttgattt |
5848328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5895150 - 5895392
Alignment:
| Q |
1 |
catgacaaacttattcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctagacctt |
100 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||| |
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| T |
5895150 |
catgacaaacttattggaattggatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacacaacttatatggctagacctt |
5895249 |
T |
|
| Q |
101 |
tcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtaaatttaacg |
200 |
Q |
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||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||| ||| |
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| T |
5895250 |
tctcataatgatttaagtggtgtaattccatcatacctttttacactcccatcattggaggagatttatcttgcatccaaccagtttagtaaatttgacg |
5895349 |
T |
|
| Q |
201 |
aattcataaatgtgtcttcctctgtgttggaattccttgattt |
243 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||| |
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| T |
5895350 |
aattcataaatgtgtcttccaatgtgatggaattccttgattt |
5895392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 5613626 - 5613484
Alignment:
| Q |
81 |
accttaccttcctagacctttcttataatgatttaagtggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaa |
180 |
Q |
| |
|
|||||| || |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||| |||||||| || |
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| T |
5613626 |
accttaactacctagacctttcttctaattatttaagtggtgcaattccttcatacctttttacacttccatcattggaggaaatttggcttgaatctaa |
5613527 |
T |
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| Q |
181 |
ccattttagtaaatttaacgaattcataaatgtgtcttcctct |
223 |
Q |
| |
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||| |||||||||||||||||||||||| || ||||||||||| |
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| T |
5613526 |
ccagtttagtaaatttaacgaattcatagatatgtcttcctct |
5613484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 5539549 - 5539589
Alignment:
| Q |
185 |
tttagtaaatttaacgaattcataaatgtgtcttcctctgt |
225 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
5539549 |
tttagtaaatttgacgaattcataaatgtgtcttcctctgt |
5539589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 5558927 - 5558887
Alignment:
| Q |
185 |
tttagtaaatttaacgaattcataaatgtgtcttcctctgt |
225 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
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| T |
5558927 |
tttagtaaatttgacgaattcataaatgtgtcttcctctgt |
5558887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 3749182 - 3749121
Alignment:
| Q |
20 |
ttggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacaca |
81 |
Q |
| |
|
|||||| ||||||| |||||| | ||||||||||||| |||||| ||||||| |||||||| |
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| T |
3749182 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca |
3749121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 5858295 - 5858230
Alignment:
| Q |
19 |
attggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacacct |
84 |
Q |
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||||||| ||||||| |||||| | ||||||| ||||| |||||| ||||||| ||||||||||| |
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| T |
5858295 |
attggatctttctttttgtcaatttaatggaacccttccaaattcattgtcaaacctcacacacct |
5858230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 1483286 - 1483082
Alignment:
| Q |
19 |
attggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacacaccttaccttcctagacctttcttataatgatttaagt |
118 |
Q |
| |
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||||||| || ||| ||||||| | |||||||||||||||||||| |||| || |||||||||||||| | ||||||||||||| | || ||||| || |
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| T |
1483286 |
attggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacacaccttacatacctagacctttctcaaaacaatttacgt |
1483187 |
T |
|
| Q |
119 |
ggttcaattccttcatacctttttacactcccatcattggagaagatttgtcttgaatccaaccattttagtaaatttaacgaattcataaatgtgtctt |
218 |
Q |
| |
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||| |||||||||| ||||||||||||||||||| | |||||||||| |||| || |||| | |||| |||| || | ||||||||||||||||||| |
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| T |
1483186 |
ggtgtcattccttcatccctttttacactcccatcaatagagaagattttgcttgcattcaacaagtttattaaacttgatgaattcataaatgtgtctt |
1483087 |
T |
|
| Q |
219 |
cctct |
223 |
Q |
| |
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||||| |
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|
| T |
1483086 |
cctct |
1483082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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