View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_high_16 (Length: 256)
Name: NF18413_high_16
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 10389154 - 10389403
Alignment:
| Q |
1 |
agaggctctaaattactactcaattgagtcctcaatagcacttttaatcaccttagtaataaacctatttgtgataaccgtttttgctagagtattctat |
100 |
Q |
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| T |
10389154 |
agaggctctaaattactactcaattgagtcctcaatagcactattaatcaccttagtaataaatctatttgtgataaccgtttttgctagagtattctat |
10389253 |
T |
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| Q |
101 |
gatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctatatatttggggta |
200 |
Q |
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| T |
10389254 |
gatactgaacaagccaaagacataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctttatatttggggta |
10389353 |
T |
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| Q |
201 |
ttggtttattagcagctggtcaaagtagcacaattactggtacctatgct |
250 |
Q |
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| T |
10389354 |
ttggtttattagcagctggtcaaagtagcacaattactggtacctatgct |
10389403 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 5803524 - 5803453
Alignment:
| Q |
179 |
ccaattctatatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgct |
250 |
Q |
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| T |
5803524 |
ccaatcctgtatatatggggtattgggttattagcagctggtcaaagtagcactattactggtacatatgct |
5803453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 47292086 - 47292215
Alignment:
| Q |
121 |
cataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctatatatttggggtattggtttattagcagctggt |
220 |
Q |
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| T |
47292086 |
cataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccgga |
47292185 |
T |
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| Q |
221 |
caaagtagcacaattactggtacctatgct |
250 |
Q |
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| T |
47292186 |
caaagtagcactatcactggcacatatgct |
47292215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 39674016 - 39674078
Alignment:
| Q |
188 |
tatatttggggtattggtttattagcagctggtcaaagtagcacaattactggtacctatgct |
250 |
Q |
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| T |
39674016 |
tatatatggggtattgggttgttagcagctggtcaaagtagcactataactggtacttatgct |
39674078 |
T |
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