View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_high_21 (Length: 233)
Name: NF18413_high_21
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 44879553 - 44879349
Alignment:
| Q |
13 |
cgaagaaaattatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattgatttaacgtgtcacacgatgtt |
112 |
Q |
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| T |
44879553 |
cgaacaaaattatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattcatttaacgtgtcacacgatgtt |
44879454 |
T |
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| Q |
113 |
gtctaatgaatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879453 |
gtctaatgaatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattt |
44879354 |
T |
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| Q |
213 |
tgtag |
217 |
Q |
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||||| |
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| T |
44879353 |
tgtag |
44879349 |
T |
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