View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_low_14 (Length: 266)
Name: NF18413_low_14
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_low_14 |
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| [»] scaffold0056 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0056 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 73844 - 74085
Alignment:
| Q |
19 |
agatacaactagagaagggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcaccgtcaga |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
73844 |
agatacaactagagaagggtcttggttttgctgaagatatcgttctggaactttggtgatgggttgctttactagctcctgaacagaaggcaccgtcaga |
73943 |
T |
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| Q |
119 |
gaggttccaagattcttcaccatgtctgaatccatagcttgctacaaaagaaatctagttagtagttatcttgcttagatatcttcgatgagttatatat |
218 |
Q |
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| T |
73944 |
gaggttccaagattcttcaccatgtctgaatccatagcttgctataaaagaaatatagttagtagttatcttgcttagatatcttcgatgagttatatat |
74043 |
T |
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| Q |
219 |
ttcactaagtatttaagttaattgttctctcccctttgcttc |
260 |
Q |
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| T |
74044 |
ttcactaagtatttaagttaattgttctctccccttttcttc |
74085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 21209290 - 21209156
Alignment:
| Q |
19 |
agatacaactagagaagggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcaccgtcaga |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
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| T |
21209290 |
agatacaactagagaagggtcttggttttgctgaagatatcgttctggaactttggtgatgggttgctttactagctcctgtacagaaggcaccaagaga |
21209191 |
T |
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| Q |
119 |
gaggttccaagattcttcaccatgtctgaatccat |
153 |
Q |
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| T |
21209190 |
gagcttccaagcttatttaccatttctgaatccat |
21209156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 22985656 - 22985716
Alignment:
| Q |
48 |
gttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaagg |
108 |
Q |
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| T |
22985656 |
gttgaagatattgttctggaactttggtgatgggttgttttactaactcttgaacagaagg |
22985716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 21347954 - 21347862
Alignment:
| Q |
34 |
agggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcaccgtcagagaggttcc |
126 |
Q |
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| T |
21347954 |
agggtcttgatttggatgaagatatcgttctggaatattggtaatgggttgttttactaactcttgaacagaaggaaccaggagagaggttcc |
21347862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 23023210 - 23023288
Alignment:
| Q |
34 |
agggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcacc |
112 |
Q |
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| T |
23023210 |
agggtcttgatttggatgaagatattgttctggaatttctgtgttgggctgctttgcaagctcttggacagaaggcacc |
23023288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 26915534 - 26915661
Alignment:
| Q |
26 |
actagagaagggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcaccgtcagagaggttc |
125 |
Q |
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|||| |||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||| |||| |
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| T |
26915534 |
actacagaaggttcttggttttgctgaacatatcgttctggaactttggcgatgggttgctttactagctcttggacagaaggaaccaagagagatgttc |
26915633 |
T |
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| Q |
126 |
caagattcttcaccatgtctgaatccat |
153 |
Q |
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| T |
26915634 |
caagcttctttaccatttctgaatccat |
26915661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 25208 - 25286
Alignment:
| Q |
34 |
agggtcttggttttgttgaagatatcgttctggaactttggtgatgggttgctttactagctcttgaacagaaggcacc |
112 |
Q |
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||||||||| ||| | | ||||||| |||||||||||| ||||||||| |||| | |||||||| |||||||||||| |
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| T |
25208 |
agggtcttgatttggataaagatattgttctggaacttctatgatgggtttctttgcaagctcttgtacagaaggcacc |
25286 |
T |
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