View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_low_2 (Length: 575)
Name: NF18413_low_2
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Complemental strand, 54293569 - 54293022
Alignment:
| Q |
17 |
atattttactttcgttctggataaaagaatgatagaaacatttaaagtttgttggttactttgaatgaagttattatggataaattgatattgcttgttt |
116 |
Q |
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| T |
54293569 |
atattttactttcgttctggataaaagaatgatagaaacatttaaagtttgttggttactttgaatgaagttattatggataaattgatattgcttgttt |
54293470 |
T |
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| Q |
117 |
tgtttcctattagaatatgcctgtatcgtggaagttgtatgatattgtttgtttgaatcaaagtttgttggcttctttgaaacttgttgtgtcttcgaaa |
216 |
Q |
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| T |
54293469 |
tgtttcctattagaatatgcctgtatcgtggaagttgtatgatattgtttgtttgaatcaaagtttgttggtttctttgaaacttgttgcgtcttcgaaa |
54293370 |
T |
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| Q |
217 |
cgaaacaaaatagagaaaaagaattgtaataaaacatagaatctcaattcattatgtccaaaaaagagttacaaacttgaatnnnnnnngaatattttac |
316 |
Q |
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| T |
54293369 |
cgaaacaaaatagagaaaaagaattgtaataaaacatagaatctcaattcattatgtccaaaaa-gagttacaaacttgaataaaaaaagaatattttac |
54293271 |
T |
|
| Q |
317 |
aatgaaaatacggttcagtatgtatcaattttacaatgacctaatagtactactgtacagattttttatcaatctcaaattccgcaaagtagtgtgtagt |
416 |
Q |
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| T |
54293270 |
aatgaaaatacggttcagtatgtatcaattttacaatgacctaatagtactactgtacagattttttatcaatctcaaattccgcaaagtagtgtgtagt |
54293171 |
T |
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| Q |
417 |
tttccctttgcctttgtgctgtcaggttctgcagagtagtattgatgtttctttacatctatgctgtcaaatcctgcaagttatacaatgacttttgcag |
516 |
Q |
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| T |
54293170 |
tttccctttgcctttgtgctgtcaggttctgcagagtagtattgatgtttctttacatctatgctgtcaaatcctgcaagtcatacaatgacttttgcag |
54293071 |
T |
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| Q |
517 |
ctcttattccctcatcctttaactcgttgattcttcctcttcacctttg |
565 |
Q |
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| T |
54293070 |
ctcttattccctcatcctttaactcgttgattcttcctcttcacctttg |
54293022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 402
Target Start/End: Complemental strand, 23910656 - 23910589
Alignment:
| Q |
335 |
tatgtatcaattttacaatgacctaatagtactactgtacagattttttatcaatctcaaattccgca |
402 |
Q |
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| T |
23910656 |
tatgtatcaattttacaatgtcctaatagtactattttacaaattttctatcaatctcaaatttcgca |
23910589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 14255674 - 14255622
Alignment:
| Q |
242 |
gtaataaaacatagaatctcaattcattatgtccaaaaaagagttacaaactt |
294 |
Q |
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| T |
14255674 |
gtaatgaaacaaagaatctcaattcattatgttctaaaaagagttacaaactt |
14255622 |
T |
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