View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18413_low_20 (Length: 238)
Name: NF18413_low_20
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 7415006 - 7415200
Alignment:
| Q |
32 |
gctcttgtaattaagtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415006 |
gctcttgtaattaagtatgatgacattaaactcacacaaatccaattatgttgaattctcaaccttattaaacacaaaacctaagtagagaaaatactca |
7415105 |
T |
|
| Q |
132 |
aagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattca |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415106 |
aagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattca |
7415200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 7422766 - 7422859
Alignment:
| Q |
133 |
agggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccatattca |
226 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| ||||| |||||||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
7422766 |
agggagtaaagatgatgaggaagtctaggctccacaacaacttctagtggtattttcctaggagtagtcagcccaaaaatctcctccatattca |
7422859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 7429161 - 7429263
Alignment:
| Q |
122 |
aaaatactcaaagggagtaaagatgatcagcaagtctaggctccacaacaatttctaatggtattttcttaggtgtagaaagcccaaaaatctcctccat |
221 |
Q |
| |
|
|||||||| | ||| | |||||||||| | |||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7429161 |
aaaatacttagaggcaataaagatgatacggaagtttaggctccaaaacaacttctaatggtattttcttaggtgtagtgagcccaaaaatctcctccat |
7429260 |
T |
|
| Q |
222 |
att |
224 |
Q |
| |
|
||| |
|
|
| T |
7429261 |
att |
7429263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University