View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18413_low_5 (Length: 448)
Name: NF18413_low_5
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 29 - 430
Target Start/End: Complemental strand, 22795398 - 22794992
Alignment:
| Q |
29 |
aattaaagatgattataaattttcttacaatggggttatctgggagcctaggatcagtaatgacaaagttcttctcgatacgttcaagtgtagtagcaag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795398 |
aattaaagatgattataaattttcttacaatggggttatctgggagcctaggatcagtaatgacaaagttcttctcgatacgttcaagtgtagtagcaag |
22795299 |
T |
|
| Q |
129 |
atcaagaccctttctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctgttca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795298 |
atcaagaccctttctcttttccctctttttaattttctcgtcaacactatcaggcctttcatcatcctcagagctatcctcatcatcagcaagctgttca |
22795199 |
T |
|
| Q |
229 |
tcattgaagctttcattgtttgacaaacttttccttatgaacctgcagaag--catgtatacaaattgctcatgacattgaatacgagcaaaaagaa--- |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
22795198 |
tcattgaagctttcattgtttgacaaacttttccttatgaacctgcagaagaaaacacatacaaaatgctcatgacattgaatacgagcaaaaagaaaac |
22795099 |
T |
|
| Q |
324 |
acacatattttttcaaactaaaaagacgagtagttggaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttcagggg |
423 |
Q |
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||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795098 |
acatatattttttcaaactaaaaagatgagtagttgtaagtaaaaatgcatacataccccatgaaagaacggcgacgcgagttgattttattttcagggg |
22794999 |
T |
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| Q |
424 |
tctcagt |
430 |
Q |
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||||||| |
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| T |
22794998 |
tctcagt |
22794992 |
T |
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Back To:
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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 40960351 - 40960271
Alignment:
| Q |
73 |
agcctaggatcagtaatgacaaagttcttctcgatacgttcaagtgtagtagcaagatcaagaccctttctcttttccctc |
153 |
Q |
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||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||| |||||||||| |
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| T |
40960351 |
agccttggatcagtaatgacaaagtttttctcaatacgctcaagtgtagtagcaagatcaagaccttttcgcttttccctc |
40960271 |
T |
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