View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18413_low_6 (Length: 444)
Name: NF18413_low_6
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18413_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 4638688 - 4638987
Alignment:
| Q |
8 |
gattagatgaaatttgtaaatgaaagatagagataaaaatatatggtataatgtatgatgtcctaaattcgaatatcaaataataaaattgtagccatcg |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4638688 |
gattagatgaaaattgtaaatgaaagatagagataaaaatatatggtataatgtatcatatcctaaattcgaatttcaaataattaaattgtagccatca |
4638787 |
T |
|
| Q |
108 |
aataaagaattattttgtaaaacgtattagaagatagggaaatcactaagaaacaacatcaataggcactgaacacgaaattagtcacaactttgaaatc |
207 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
4638788 |
aatagggaattattttctaaaacgtattagcagatagggaaatcactaagaaacaacatcaataggcagtggccacgaaattagtcacaactttgaaatc |
4638887 |
T |
|
| Q |
208 |
gtcaaactttcctttga-------tagggagatttaaaacgaatgagtggtaggagtacacttgagcgtagaaaaatctactcaaaaatatgtttctatt |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4638888 |
gtcaaactttcctttgatagggattagggagattt-aaacgaatgagtggtaggagtacacttgagcgtagaaaaatctactcaaaaatatgtttctatt |
4638986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 4632421 - 4632595
Alignment:
| Q |
3 |
gggacgattagatgaaatttgtaaatgaaagatagagataaaaatatatggtataatgtatgatgtcctaaattcgaatatcaaataataaaattgtagc |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4632421 |
gggacgattagatgaaatttttaaatgaaaaatagagataaaaatatatggtataatgtatgatatcctaaatttgaatttcaaataataaaattgtagc |
4632520 |
T |
|
| Q |
103 |
catcgaataaagaattattttgtaaaacgtattagaagatagggaaatcactaagaaacaacatcaataggcact |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632521 |
catcgaataaagaattattttgtaaaacgtattagaagatagggaaatcactaagaaacaacatcaataggcact |
4632595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 259 - 429
Target Start/End: Original strand, 4632592 - 4632769
Alignment:
| Q |
259 |
cacttgagcgtagaaaaatctactcaaaaatatgtttctattt-------ttggttcttgttagccnnnnnnnctatgatatccatgacaaatgctcacg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4632592 |
cacttgagcgtagaaaaatctactcaaaaatatgtttctatttgatccttttggttcttgttagccaaaaaaactatgatatccatgacaaatgctcacg |
4632691 |
T |
|
| Q |
352 |
aggtctgaaattttaatcacaacaatacttgatacgggtgagatagatcaatgatttttgatattgatcctacaatat |
429 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4632692 |
aggtcggaaattgtaatcacaacaatacttgatacgggtgagatagatcaatggtttttgatattgatcctgcaatat |
4632769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 4669024 - 4669196
Alignment:
| Q |
8 |
gattagatgaaatttgtaaatgaaagatagagataaaaatatatggtataatgt--atgatgtcctaaattcgaatatcaaataataaaattgtagccat |
105 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||| |||||| || || || | ||||| |||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
4669024 |
gattagatcaaaattgtaaatgaaagatagaggtaagaatatacgggattatatgcatgatatcctaaattcgaattttaaataataaaattgtatccat |
4669123 |
T |
|
| Q |
106 |
cgaataaagaattattttgt-----aaaacgtattagaagatagggaaatcactaagaaacaacatcaatagg |
173 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | |||||| ||| |||| ||||||||||||||||| |
|
|
| T |
4669124 |
cgaataggaaattattttgtaaatgaaaacgtattaggaaataggggaattactatgaaacaacatcaatagg |
4669196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 4670140 - 4670224
Alignment:
| Q |
348 |
cacgaggtctgaaattttaatcacaac---aatacttgatacgggtgagatagatcaatgatttttgatattgatcctacaatat |
429 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
4670140 |
cacgaggtctgaaattgtaattacaacgataatacttgatacgggtgagatagatcaatgaattttgatattggtcctgcaatat |
4670224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 4669218 - 4669355
Alignment:
| Q |
162 |
aacatcaataggcactgaacacgaaattagtcacaactttgaaatcgtcaaactttcctttgatag----ggagattt------aaaacgaatgagtggt |
251 |
Q |
| |
|
|||||||||||| || | || ||||||||| ||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| |
|
|
| T |
4669218 |
aacatcaatagggaccgtccatgaaattagt-acaactttgaaatcgtcaaactttcttttgaaagataaggagatttcgatataaaacgaatgagtggt |
4669316 |
T |
|
| Q |
252 |
aggagtacacttgagcgtagaaaaatctactcaaaaata |
290 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||| ||||| |
|
|
| T |
4669317 |
ctgagtacacttgagcatagaaatatctattcagaaata |
4669355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 4645372 - 4645456
Alignment:
| Q |
185 |
aaattagtcacaactttgaaatcgtcaaactttcctttg----atagggaga-tttaaaacgaatgagtggtaggagtacacttg |
264 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
4645372 |
aaattagttgcaagtttgaaatcttcaaactttcctttggatgatagggataatttaaaacgaatgagtggtaggagttcacttg |
4645456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 18926128 - 18926079
Alignment:
| Q |
373 |
acaatacttgatacgggtgagatagatcaatgatttttgatattgatcct |
422 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
18926128 |
acaatacttgatgcgggtgagatagatcattggattttgatattgatcct |
18926079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University