View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18413_low_9 (Length: 336)

Name: NF18413_low_9
Description: NF18413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18413_low_9
NF18413_low_9
[»] chr4 (3 HSPs)
chr4 (1-302)||(53651357-53651658)
chr4 (29-63)||(33960137-33960171)
chr4 (241-289)||(56459742-56459790)
[»] chr7 (3 HSPs)
chr7 (1-196)||(17490365-17490560)
chr7 (1-196)||(17562654-17562849)
chr7 (31-63)||(39323255-39323287)
[»] chr6 (4 HSPs)
chr6 (246-302)||(27901976-27902032)
chr6 (246-302)||(33346998-33347054)
chr6 (246-302)||(35118458-35118514)
chr6 (246-302)||(35117807-35117863)
[»] chr5 (2 HSPs)
chr5 (225-289)||(34064853-34064917)
chr5 (268-302)||(2358575-2358609)
[»] chr8 (2 HSPs)
chr8 (268-302)||(34190760-34190794)
chr8 (269-302)||(2726863-2726896)
[»] chr3 (1 HSPs)
chr3 (182-287)||(54515787-54515893)
[»] chr2 (1 HSPs)
chr2 (225-289)||(3130175-3130239)
[»] chr1 (1 HSPs)
chr1 (241-289)||(19402353-19402401)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 53651357 - 53651658
Alignment:
Q  1 ttcatttttaagtttaattgtcatattaaacaattttgtcaaattcatctagatctagaatttcaatttcataaaatacttacagctagggttaataatc 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53651357 ttcatttttgagtttaattgtcatattaaacaattttgtaaaattcatctagatctagaattacaatttcataaaatacttacagctagggttaataatc 53651456  T
Q  101 tcaatggaatgattttctcagatctgtcttgaaattgctgttagtgacttggagaagatgaaccgtgaatgggttcatcaaaattgataggctatggaga 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53651457 tcaatggaatgattttctcatatctgtcttgaaattgctgttagtgacttggagaagatgaaccgtgaatgggttcatcaaaattgataggctatggaga 53651556  T
Q  201 gttatatggttgttcaaaatattatttttaatcttgatcgtttatttttaatctaaccgtttataagtattctcatcattctcatataagatatccattc 300  Q
    || ||||||||||||||||| || |||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  53651557 gtcatatggttgttcaaaatgttgtttttaatcttgactgtttatttttaatctaaccgttcataagtgttctcatcattctcatgtaagatatccattc 53651656  T
Q  301 tc 302  Q
    ||    
T  53651657 tc 53651658  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 33960137 - 33960171
Alignment:
Q  29 aacaattttgtcaaattcatctagatctagaattt 63  Q
    |||||||||||||||||||||||||||||||||||    
T  33960137 aacaattttgtcaaattcatctagatctagaattt 33960171  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 56459742 - 56459790
Alignment:
Q  241 tttatttttaatctaaccgtttataagtattctcatcattctcatataa 289  Q
    ||||||||||||||||  ||| |||||| |||||| |||||||||||||    
T  56459742 tttatttttaatctaaaggttgataagtgttctcaccattctcatataa 56459790  T

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Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 17490560 - 17490365
Alignment:
Q  1 ttcatttttaagtttaattgtcatattaaacaattttgtcaaattcatctagatctagaatttcaatttcataaaatacttacagctagggttaataatc 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17490560 ttcatttttaagtttaattgtcatattaaacaattttttcaaattcatctagatctagaatttcaatttcttaaaatacttacagctagggttaataatc 17490461  T
Q  101 tcaatggaatgattttctcagatctgtcttgaaattgctgttagtgacttggagaagatgaaccgtgaatgggttcatcaaaattgataggctatg 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17490460 tcaatggaatgattttctcagatctgtcttgaaattgttgttagtgacttggagaagatgatccgtgaatgggttcatcaaaattgataggctatg 17490365  T

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Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 17562654 - 17562849
Alignment:
Q  1 ttcatttttaagtttaattgtcatattaaacaattttgtcaaattcatctagatctagaatttcaatttcataaaatacttacagctagggttaataatc 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17562654 ttcatttttaagtttaattgtcatattaaacaattttttcaaattcatctagatctagaatttcaatttcttaaaatacttacagctagggttaataatc 17562753  T
Q  101 tcaatggaatgattttctcagatctgtcttgaaattgctgttagtgacttggagaagatgaaccgtgaatgggttcatcaaaattgataggctatg 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17562754 tcaatggaatgattttctcagatctgtcttgaaattgttgttagtgacttggagaagatgatccgtgaatgggttcatcaaaattgataggctatg 17562849  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 39323287 - 39323255
Alignment:
Q  31 caattttgtcaaattcatctagatctagaattt 63  Q
    |||||||||||||||||||||||||||||||||    
T  39323287 caattttgtcaaattcatctagatctagaattt 39323255  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 27901976 - 27902032
Alignment:
Q  246 ttttaatctaaccgtttataagtattctcatcattctcatataagatatccattctc 302  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||||| ||||||||    
T  27901976 ttttaatctaacggtctataattgttctcatcattctcacataagatacccattctc 27902032  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 33347054 - 33346998
Alignment:
Q  246 ttttaatctaaccgtttataagtattctcatcattctcatataagatatccattctc 302  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||||| ||||||||    
T  33347054 ttttaatctaacggtctataattgttctcatcattctcacataagatacccattctc 33346998  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 35118458 - 35118514
Alignment:
Q  246 ttttaatctaaccgtttataagtattctcatcattctcatataagatatccattctc 302  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||||| ||||||||    
T  35118458 ttttaatctaacggtctataattgttctcatcattctcacataagatacccattctc 35118514  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 35117863 - 35117807
Alignment:
Q  246 ttttaatctaaccgtttataagtattctcatcattctcatataagatatccattctc 302  Q
    |||||||||||| || ||||| | ||||||||||||||| ||||||||  |||||||    
T  35117863 ttttaatctaactgtctataattgttctcatcattctcacataagatactcattctc 35117807  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 34064853 - 34064917
Alignment:
Q  225 tttttaatcttgatcgtttatttttaatctaaccgtttataagtattctcatcattctcatataa 289  Q
    |||||||||| || | ||||||||||||||||  ||| |||||| |||||| |||||||||||||    
T  34064853 tttttaatctagaccatttatttttaatctaaaggttgataagtgttctcaccattctcatataa 34064917  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 2358609 - 2358575
Alignment:
Q  268 tattctcatcattctcatataagatatccattctc 302  Q
    ||||||||||||||||| |||||||||||||||||    
T  2358609 tattctcatcattctcacataagatatccattctc 2358575  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 34190794 - 34190760
Alignment:
Q  268 tattctcatcattctcatataagatatccattctc 302  Q
    ||||||||||||||||||||||||||| |||||||    
T  34190794 tattctcatcattctcatataagatattcattctc 34190760  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 2726896 - 2726863
Alignment:
Q  269 attctcatcattctcatataagatatccattctc 302  Q
    ||||| ||||||||||||||||||||||||||||    
T  2726896 attcttatcattctcatataagatatccattctc 2726863  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 54515893 - 54515787
Alignment:
Q  182 aattgataggctatggagagttatatgg-ttgttcaaaatattatttttaatcttgatcgtttatttttaatctaaccgtttataagtattctcatcatt 280  Q
    |||||||||| || ||||||| | |||| ||||| |||||  | ||||||||||  ||| ||||| ||| ||||||  ||| | ||||||||||||||||    
T  54515893 aattgataggatagggagagtcacatggattgtttaaaatgatgtttttaatctgaatcatttatatttgatctaaaggttcacaagtattctcatcatt 54515794  T
Q  281 ctcatat 287  Q
    |||||||    
T  54515793 ctcatat 54515787  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 3130175 - 3130239
Alignment:
Q  225 tttttaatcttgatcgtttatttttaatctaaccgtttataagtattctcatcattctcatataa 289  Q
    ||||||||||| ||| ||||||||| ||||||  ||| | ||||||||||| |||||| ||||||    
T  3130175 tttttaatcttaatcatttatttttgatctaagggttgagaagtattctcaccattcttatataa 3130239  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 19402401 - 19402353
Alignment:
Q  241 tttatttttaatctaaccgtttataagtattctcatcattctcatataa 289  Q
    ||||||||||||||||  ||| |||||| |||||| |||||||||||||    
T  19402401 tttatttttaatctaaaggttgataagtgttctcaccattctcatataa 19402353  T

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