View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_high_13 (Length: 409)

Name: NF18415_high_13
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_high_13
NF18415_high_13
[»] chr2 (9 HSPs)
chr2 (3-182)||(824782-824961)
chr2 (228-391)||(824615-824782)
chr2 (31-208)||(989773-989950)
chr2 (112-208)||(1012172-1012268)
chr2 (3-85)||(410248-410333)
chr2 (3-80)||(821147-821227)
chr2 (122-205)||(1043976-1044059)
chr2 (29-80)||(965481-965532)
chr2 (3-144)||(1024900-1025040)
[»] scaffold0244 (1 HSPs)
scaffold0244 (85-182)||(6036-6133)
[»] chr6 (1 HSPs)
chr6 (29-85)||(10116763-10116819)
[»] chr4 (1 HSPs)
chr4 (168-266)||(40640740-40640839)
[»] chr7 (1 HSPs)
chr7 (119-188)||(32246796-32246865)
[»] chr5 (1 HSPs)
chr5 (3-80)||(36199114-36199190)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 824961 - 824782
Alignment:
Q  3 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824961 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatac 824862  T
Q  103 atagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaatta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  824861 atagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgttgtggttgattcacctaaatta 824782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 228 - 391
Target Start/End: Complemental strand, 824782 - 824615
Alignment:
Q  228 acgcagataaatcacatttt----tgctttgttttccatcccattcaatcagtgtattatgcatttaatctaactctatgaaacactaatacatcatatg 323  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  824782 acgcagataaatcacattttaatttgctttgttttccatcccattcaatcagtgtattatgcatttaatctaactctatgaaacactaatacatcatatg 824683  T
Q  324 acttgttaacacagatattggtaannnnnnnagagaaaacagaattatcaaatgtaatcacatgtccc 391  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  824682 acttgttaacacagatattggtaatttttttagagaaaacagaattatcaaatgtaatcacatgtccc 824615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 989773 - 989950
Alignment:
Q  31 acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatacatagtggagctccaggtgggtcaaatta 130  Q
    ||||||| |||||||||  ||||| |||||||||||| |||||||||||| |||| ||||||||||| |   || || |||||||| |||||||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagcacttgtactaccaaatcccaattattgtagagctccaagtgggtcaaatta 989872  T
Q  131 tgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaatcag 208  Q
    |||||  | ||||||||| || ||||||||||  | | |||  ||||||||||||| |||||||||| ||||||||||    
T  989873 tgaaacatgggaatgtcaacacaagggcgctgcagcttatttgcctaaattatgtacaaagacacactatcaaatcag 989950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 1012172 - 1012268
Alignment:
Q  112 ctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaatcag 208  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||||| ||||| |  ||||||||||||| ||||| |||||||||| ||||| ||||    
T  1012172 ctccaagtgggtcaaattatgaaagatataaatgtcatcataagggagctgtagccgattcacctaaataatgtaaaaagacacactatcaattcag 1012268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 410333 - 410248
Alignment:
Q  3 ataaaccaaatacgattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 85  Q
    ||||| |||||| |||||||||| ||||   |||||||||||||||||||||||| |||||||||||| | |||||||||| ||||    
T  410333 ataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgt 410248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 821227 - 821147
Alignment:
Q  3 ataaaccaaatacgattcttaaacttaaa---caaacccgataaagttcaagattctgaagcttagggaagtggtggagca 80  Q
    ||||| |||||| |||||||||||||||    |||||| |||||||||||||||| |||||||||||| | ||||||||||    
T  821227 ataaatcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagca 821147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 1044059 - 1043976
Alignment:
Q  122 gtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtagaaagacacaccatcaaat 205  Q
    ||||||||| ||||| ||  ||||||||||||||| |||||    ||||||||||||||||||||||||||  ||| |||||||    
T  1044059 gtcaaattacgaaagatataaatgtcatcataaggacgctgcaactgattcacctaaattatgtagaaagatgcactatcaaat 1043976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 965481 - 965532
Alignment:
Q  29 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 80  Q
    ||||||||| |||||||||||||||| |||||||||||| | || |||||||    
T  965481 aaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagca 965532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 1024900 - 1025040
Alignment:
Q  3 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgtgctaccaaatccaatac 102  Q
    |||||||||||| ||||||||||||| ||||||||   |||| ||  ||||| |||||||||||| ||||||| || | ||||  || ||||| | |       
T  1024900 ataaaccaaatatgattcttaaactt-aacaaacctcgtaaattttgagattttgaagcttagggcagtggtgaagaacttgtaatatcaaatgccaact 1024998  T
Q  103 atagtggagctccaggtgggtcaaattatgaaaggtaggaat 144  Q
     | ||||||||||| ||  ||||||||||||||| |||||||    
T  1024999 gttgtggagctccaagtatgtcaaattatgaaagataggaat 1025040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 6036 - 6133
Alignment:
Q  85 tgctaccaaatccaatacatagtggagctccaggtgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaatta 182  Q
    ||||||||||||| |   || |||||| |||| ||||||||||||||||||| ||| ||| ||| ||||||  |  ||||| ||||||||||||||||    
T  6036 tgctaccaaatcccaactattgtggagttccaagtgggtcaaattatgaaagatagaaatatcaccataagatccttgtggctgattcacctaaatta 6133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 10116763 - 10116819
Alignment:
Q  29 aaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagcagttgt 85  Q
    ||||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||||    
T  10116763 aaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgt 10116819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 40640839 - 40640740
Alignment:
Q  168 gattcacctaaattatgtagaaagacacaccatcaaatcagagcaaa-ttcccaaaataaaacgcagataaatcacatttttgctttgttttccatccca 266  Q
    ||||||| |||||||| ||||| | |||||||||||||||| | ||| ||| ||||| |||| ||| || ||| |||||| | || ||||||||||||||    
T  40640839 gattcacttaaattatttagaatggcacaccatcaaatcagggaaaagttctcaaaagaaaatgcatatgaataacatttctactgtgttttccatccca 40640740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 32246865 - 32246796
Alignment:
Q  119 tgggtcaaattatgaaaggtaggaatgtcatcataagggcgctgtggttgattcacctaaattatgtaga 188  Q
    |||||||||||||||||  ||||||| ||||| |||||| | ||  |||||||| ||| |||||||||||    
T  32246865 tgggtcaaattatgaaaaataggaatatcatcgtaagggtgttgaagttgattcgcctgaattatgtaga 32246796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 36199190 - 36199114
Alignment:
Q  3 ataaaccaaatacgattcttaaacttaaacaaacccgataaagttcaagattctgaagcttagggaagtggtggagca 80  Q
    |||||| |||||| |||||||| ||||| |||||| | |||||||||||| | ||||| |||||| ||||||| ||||    
T  36199190 ataaactaaatacaattcttaatcttaa-caaacctggtaaagttcaagaatttgaagtttagggcagtggtgaagca 36199114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University