View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_high_19 (Length: 343)
Name: NF18415_high_19
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 38887038 - 38886722
Alignment:
| Q |
15 |
agaattttcttatacccttttaacttgccactcacgaaaactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887038 |
agaattttcttatacccttttaacttgccactcacgaaaactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgca |
38886939 |
T |
|
| Q |
115 |
cttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgccgacacctgcatattagacgta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38886938 |
cttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgccgactcctgcatattagacgta |
38886839 |
T |
|
| Q |
215 |
aaataataaattaacacacaaaagccgtcatatatacgatacaagatgagact-ttttattagaaactatgaaagaataaaataaatggaaagttaatta |
313 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38886838 |
aaataataaattaacacacaaaaaactttatatatacgatacaagatgagacttttttattagaaactatgaaagaataaaagaaatggaaagttaatta |
38886739 |
T |
|
| Q |
314 |
taaggcatgtatatatt |
330 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38886738 |
taaggcatgtatatatt |
38886722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 4235701 - 4235598
Alignment:
| Q |
63 |
gttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgt |
162 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||| || |||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
4235701 |
gttttccctgttttgtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttcttttccttgttcctgttgtgtatgcttttgaaggcctat |
4235602 |
T |
|
| Q |
163 |
gaaa |
166 |
Q |
| |
|
|||| |
|
|
| T |
4235601 |
gaaa |
4235598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 34830026 - 34830163
Alignment:
| Q |
53 |
aactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttttcttgttcctgttgtgtatgctttt |
152 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||| || |||| || || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34830026 |
aactggtctagttttccctgttttgtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgcttta |
34830125 |
T |
|
| Q |
153 |
gatggcctgtgaaagaaatgtcggatcagtccatcttt |
190 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
34830126 |
gatggcctgtgaaagaagtgccggatctgtccatcttt |
34830163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 30505775 - 30505700
Alignment:
| Q |
117 |
tttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgc |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
30505775 |
tttcttctttttctagttcctgttgtgtatgccttggatggccggtgaaagaaatggcggatcagtccatctttgc |
30505700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 30513176 - 30513100
Alignment:
| Q |
117 |
tttcttctttttcttgttcctgttgtgtatg-cttttgatggcctgtgaaagaaatgtcggatcagtccatctttgc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
30513176 |
tttcttctttttcttgttcctgttgtgtatgcctttggatggtcggtgaatgaaatgccggatcagtccatctttgc |
30513100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 28948881 - 28949018
Alignment:
| Q |
53 |
aactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttttcttgttcctgttgtgtatgctttt |
152 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||| || |||| || || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28948881 |
aactggtctagttttccctgttttgtgccatcttgtttcacttccttcttcatcagtttgaacctttcttcttttccttgttcctgttgtgtatgcttta |
28948980 |
T |
|
| Q |
153 |
gatggcctgtgaaagaaatgtcggatcagtccatcttt |
190 |
Q |
| |
|
|||||||||||||| || || |||||| |||||||||| |
|
|
| T |
28948981 |
gatggcctgtgaaaaaagtgccggatctgtccatcttt |
28949018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University