View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_20 (Length: 342)
Name: NF18415_high_20
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 55708759 - 55709069
Alignment:
| Q |
17 |
atgaatcttgatgcaccattaagtttgttttgtatttttgcactttcctgttccaatttgactaatttacaattgcatgtgctgattgcgcttctgcagg |
116 |
Q |
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| T |
55708759 |
atgaatcttgatgcaccattaagtttgttttctatttttgcactttcctgttccaatttgactaatttacaattgcatgtgctgattgcgcttctgcagg |
55708858 |
T |
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| Q |
117 |
ttttttctggcttgttttgcttcagacaacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtgg |
216 |
Q |
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| T |
55708859 |
ttttttctggcttgttttgcttcaggcaacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtga |
55708958 |
T |
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| Q |
217 |
tcaggctagctcttccaattgttcagcttgccacaacaagaatctatatctcaaaataatttagctgaaattgttgcaagttctagaaaaaattgcttga |
316 |
Q |
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| T |
55708959 |
tcaggctagctcttccaattgttcagcttgccacaacaagaatctatatctcaaaataatttagctgaaattgttgcaagttctagaagaaattgcttga |
55709058 |
T |
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| Q |
317 |
accatggttgt |
327 |
Q |
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| T |
55709059 |
accatggttgt |
55709069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 40 - 304
Target Start/End: Original strand, 49444570 - 49444836
Alignment:
| Q |
40 |
tttgttttgtatttttgcactttcctgttccaatttgactaatttacaattgcatgtgctgattgc-gcttctgcaggttttttctggcttgttttgctt |
138 |
Q |
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| T |
49444570 |
tttgttttctactttttcaccttactgttccaatttgaataatttacaattgcatgtgttgattgccgcttctgcaggtttcttctagcttattttgctt |
49444669 |
T |
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| Q |
139 |
cagacaacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccatggaaaatcttgatgatcctggtggtcaggctagctcttccaattgt |
238 |
Q |
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| T |
49444670 |
gaggcaacgcaatgcatatcaagcaagctcctcagttttgtcattgaagcccattgcaaatttagaggatcctggtggtcacgctagctcttccaattgc |
49444769 |
T |
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| Q |
239 |
tcagcttgccacaa-caagaatctatatctcaaaataatttagctgaaattgttgcaagttctagaa |
304 |
Q |
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| T |
49444770 |
tcagcttgccacaaccaagaatctatatctcaaagtcacatagctgaaattgttgaaagttctagaa |
49444836 |
T |
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