View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_high_26 (Length: 308)
Name: NF18415_high_26
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 4172023 - 4171744
Alignment:
| Q |
18 |
atttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4172023 |
atttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattg |
4171924 |
T |
|
| Q |
118 |
caattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4171923 |
caattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatatcctaagttgagatgt |
4171824 |
T |
|
| Q |
218 |
attgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttcat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4171823 |
gttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgtcggtggggacatgttcat |
4171744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 4159979 - 4160258
Alignment:
| Q |
18 |
atttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4159979 |
atttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattccaaaatgattaatttggcaatgaaagattg |
4160078 |
T |
|
| Q |
118 |
caattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgt |
217 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4160079 |
caatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgacttgt |
4160178 |
T |
|
| Q |
218 |
attgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttcat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160179 |
gttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgttggtggggacatgttcat |
4160258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 296
Target Start/End: Complemental strand, 4177641 - 4177368
Alignment:
| Q |
23 |
tgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggcattgaaagattgcaatt |
122 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||||| || |||||||| |||||||||||||| ||| |||| || |||||||||| |||||| ||| |
|
|
| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
|
| Q |
123 |
ttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgt |
222 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgt |
4177442 |
T |
|
| Q |
223 |
ttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttca |
296 |
Q |
| |
|
|||||| | ||| | ||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
4177441 |
gtttgataggccacaagttgtagagaacttatctggaagcaataatttgacttatgttggtggggacatgttca |
4177368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 34343521 - 34343695
Alignment:
| Q |
71 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatg |
170 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| |||||| |||| | | |||||||| | | | ||||| |||||||||||||||||||||| || |
|
|
| T |
34343521 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactg |
34343620 |
T |
|
| Q |
171 |
gaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtag |
245 |
Q |
| |
|
|||| || | || ||||| |||||| | ||||||||||||| |||| |||||| ||||| |||| ||||||||| |
|
|
| T |
34343621 |
gaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 34330989 - 34331071
Alignment:
| Q |
146 |
attgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||||||||| | | |||| |||||||||| |
|
|
| T |
34330989 |
attgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttga |
34331071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University