View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_high_27 (Length: 301)
Name: NF18415_high_27
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 21394803 - 21394973
Alignment:
| Q |
19 |
ttgatgaatagtattacatgaattagattaaactaattgaagttatgttatcctttaaactattgaggtaataatttaaattaaatcttcaagacaaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21394803 |
ttgatgaatagtattacatgaattagattaaactaattgaagttatgttatcctttaacctattgaggtaataatttaaattaaatcttcaagacaaaga |
21394902 |
T |
|
| Q |
119 |
attaaattaaaatttgttttacctatataaaattcaaaaagaggaagtggtcttaatgtaaatttgtagtt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21394903 |
attaaattaaaatttgttttacctatataaaattcaaaaagaggaagtggtctcaatgtaaatttgtagtt |
21394973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 21395029 - 21395069
Alignment:
| Q |
245 |
ggttacgagtttaagcttaaattatagaaagatcatagagg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21395029 |
ggttacgagtttaagcttaaattatagaaagatcatagagg |
21395069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University