View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_39 (Length: 254)
Name: NF18415_high_39
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 32530345 - 32530589
Alignment:
| Q |
1 |
tttccttcgtccttagacctctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcacgtgccgggtggacc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32530345 |
tttccttcctccttagacctctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcacgtgccgggtggacc |
32530444 |
T |
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| Q |
101 |
ggagtttctcctccttaagacggagtttttcttcaacctggtctaaaatagctggtccacctggatgtgcaacccaaaagatcgaattccaatcacttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32530445 |
ggagtttctcctccttaagacggagtttttcttcaacctggtctaaaatagccggtccacctggatgtgcaacccaaaagatcgaattccaatcacttat |
32530544 |
T |
|
| Q |
201 |
tccaattggtgcaaaagcctcaaccaaactcttttcaatattctt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32530545 |
tccaattggtgcaaaagcctcaaccaaactcttttcaatattctt |
32530589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5285074 - 5285008
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5285074 |
tctttctcatttcatccaagataaacaaaacacatgcacttgacatatttccatattcactgagcac |
5285008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 46706344 - 46706410
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
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| T |
46706344 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactaagcac |
46706410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5289053 - 5289119
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5289053 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcac |
5289119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5303262 - 5303196
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5303262 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcac |
5303196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5311163 - 5311097
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5311163 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcac |
5311097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 5315877 - 5315811
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5315877 |
tctttctcatttcatctaagataaacaaaacacacgcacttgacatatttccatattcactgagcac |
5315811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 44129340 - 44129274
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44129340 |
tctttctcatttcatctaagataaacaaaacacaagcacttgacatatttccatattcactaagcac |
44129274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 44133545 - 44133479
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
44133545 |
tctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaagcac |
44133479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 44141967 - 44141901
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
44141967 |
tctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaagcac |
44141901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 1505743 - 1505677
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
1505743 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactaagcac |
1505677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 1492934 - 1492868
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
86 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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|
| T |
1492934 |
tctttctcatttcatccaagataaacaatacacatgcacttgacatatttccatattcacttagcac |
1492868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 1487437 - 1487373
Alignment:
| Q |
19 |
ctctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaag |
83 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||| |
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|
| T |
1487437 |
ctctttctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcactaag |
1487373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 35251577 - 35251523
Alignment:
| Q |
20 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccata |
74 |
Q |
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|||||||||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |
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| T |
35251577 |
tctttctcatttcatctaaaatgaacaacacacaagcacttgacatgttcccata |
35251523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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