View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_42 (Length: 242)
Name: NF18415_high_42
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42528194 - 42527955
Alignment:
| Q |
1 |
ccaattagcacaagtaccttgtgatataaaaactttaaacaacatccagataacaaacaaacaagcaagtaaaaggtaaacagaaagaaggacatgagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42528194 |
ccaattagcacaagtaccttgtgatataaaaactttaaacaacatccagataacaaacaaacaagcaagtaaaaggtaaacagaaagaaggacctgagaa |
42528095 |
T |
|
| Q |
101 |
caaacaacgttgcaatgacagccatggttctataccaacc---ttatgtatatcatgacatctttctctcaagttctaaccactctcttagctagaagtg |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528094 |
caaacaacgttgcaatgacagccatggttctataccaaccttattatgtatatcatgacatctttctctcaagttctaaccactctcttagctagaagtg |
42527995 |
T |
|
| Q |
198 |
agaaactatggaatctgttccttatttatttcttgtgtct |
237 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42527994 |
agcaactatggaatctgttccttatttatttcttgtgtct |
42527955 |
T |
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