View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_48 (Length: 228)
Name: NF18415_high_48
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2572163 - 2572390
Alignment:
| Q |
1 |
atgtgacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatat |
100 |
Q |
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| T |
2572163 |
atgtgacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatat |
2572262 |
T |
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| Q |
101 |
gtacacgtcaagttaccccccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaatggtagttagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572263 |
gtacacgtcaagttaccccccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaatggtagttagg |
2572362 |
T |
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| Q |
201 |
catagttaggcaactgccatattttttc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2572363 |
catagttaggcaactgccatattttttc |
2572390 |
T |
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