View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_high_49 (Length: 225)
Name: NF18415_high_49
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_49 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37844854 - 37844630
Alignment:
| Q |
1 |
catttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844854 |
catttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattgttg |
37844755 |
T |
|
| Q |
101 |
aaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844754 |
aaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaa |
37844655 |
T |
|
| Q |
201 |
acataggttacttttggaacattca |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37844654 |
acataggttacttttggaacattca |
37844630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 35025610 - 35025487
Alignment:
| Q |
87 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
186 |
Q |
| |
|
|||||||||| || |||| | ||||||| |||||||||| || |||||||| |||||||||||||||| || ||||||| | |||||||||||| | |
|
|
| T |
35025610 |
tacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaaga |
35025511 |
T |
|
| Q |
187 |
tcaaacaaggccaaacataggtta |
210 |
Q |
| |
|
|||||| ||||||| ||||||||| |
|
|
| T |
35025510 |
tcaaactaggccaagcataggtta |
35025487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 37851957 - 37851838
Alignment:
| Q |
102 |
aggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaa |
201 |
Q |
| |
|
|||||| ||||||| |||||| |||| || |||||||| |||||||||||||||| || ||||||| | ||||||| |||| ||||||| || |||| |
|
|
| T |
37851957 |
aggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaag |
37851858 |
T |
|
| Q |
202 |
cataggttacttttggaaca |
221 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
37851857 |
cataggttatttttggaaca |
37851838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 37838645 - 37838511
Alignment:
| Q |
85 |
aatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaa |
184 |
Q |
| |
|
|||||||||||| || ||||| ||||||| ||||||||||| || ||||||||||||||||||||||||| || |||||| | ||||||| |||| |
|
|
| T |
37838645 |
aatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaa |
37838546 |
T |
|
| Q |
185 |
aatcaaacaaggccaaacataggttacttttggaa |
219 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |
|
|
| T |
37838545 |
gatcaaaattggccaagcataggttatttttggaa |
37838511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 37846364 - 37846220
Alignment:
| Q |
53 |
attggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttg |
152 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||||| | ||| ||||||||| ||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
37846364 |
attggcatgtataaagtatgatttaggttgataatacaaggatttcttttggtacatatattgaccccactgtgagaggaaaaaccaattgaaaagttgt |
37846265 |
T |
|
| Q |
153 |
gtaactactggaccaacgccagagggaaggaaaatcaaacaaggc |
197 |
Q |
| |
|
|||| | ||| ||| | |||||||||| |||||||||||||| |
|
|
| T |
37846264 |
gtaagtgttggcccagtgatagagggaaggtaaatcaaacaaggc |
37846220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 37833098 - 37833040
Alignment:
| Q |
109 |
tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggacca |
167 |
Q |
| |
|
||||||| |||||||| || || |||||||| |||||||||||||||| || ||||||| |
|
|
| T |
37833098 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggacca |
37833040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 37837362 - 37837332
Alignment:
| Q |
1 |
catttaggttctctgtagcctccaaaactag |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37837362 |
catttaggttctctgtagcctccaaaactag |
37837332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 36867324 - 36867190
Alignment:
| Q |
87 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
186 |
Q |
| |
|
|||||||||| || |||| | ||||||| ||||||||||| || |||||||| |||||||||||| ||| || | || | | |||||||||||| | |
|
|
| T |
36867324 |
tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaaga |
36867225 |
T |
|
| Q |
187 |
tcaaacaaggccaaacataggttacttttggaaca |
221 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
36867224 |
tcaaactaggccaaacatagtttatttttggaaca |
36867190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University