View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_55 (Length: 212)
Name: NF18415_high_55
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 11786766 - 11786651
Alignment:
| Q |
10 |
agatgaaggtgggttcattctaatatagtgcttttttaaaatttaaaaataatttgatacattgagacaaagtgtgttgagaaaacgacgaggctggctt |
109 |
Q |
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| T |
11786766 |
agatgagggtgggttcattctaatatagtgcttttttaaaatttaaaaataatttgatacattgagaaaaagtgtgtcgagaaaacgatgagggtggctt |
11786667 |
T |
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| Q |
110 |
cattctaatacattta |
125 |
Q |
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| T |
11786666 |
cattctaatacattta |
11786651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 11798933 - 11798818
Alignment:
| Q |
10 |
agatgaaggtgggttcattctaatatagtgcttttttaaaatttaaaaataatttgatacattgagacaaagtgtgttgagaaaacgacgaggctggctt |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||| |
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| T |
11798933 |
agatgagggtgggttcattctaatatagtgcttttttaaaatttaaaaataatttgatacattgagaaaaagtgtgtcgagaaaacgatgagggtggctt |
11798834 |
T |
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| Q |
110 |
cattctaatacattta |
125 |
Q |
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| T |
11798833 |
cattctaatacattta |
11798818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 11786604 - 11786532
Alignment:
| Q |
125 |
aaacagtttgaggtttagagttttggtgagtaaatatccgcattaatatgggaga-tttgttcagcatgaagg |
196 |
Q |
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| T |
11786604 |
aaacagtttgaggtttagagttttggtgagtaaatatccgcattaatatgggagattttgtgcagcatgaagg |
11786532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 11798771 - 11798699
Alignment:
| Q |
125 |
aaacagtttgaggtttagagttttggtgagtaaatatccgcattaatatgggaga-tttgttcagcatgaagg |
196 |
Q |
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| T |
11798771 |
aaacagtttgaggtttagagttttggtgagtaaatatccgcattaatatgggagattttgtgcagcatgaagg |
11798699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 11786823 - 11786742
Alignment:
| Q |
38 |
tgcttttttaaaatttaaaaataatttgatacattgagacaaagtgtgttgagaaaacgacgaggctggcttcattctaata |
119 |
Q |
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| T |
11786823 |
tgctttttttaaatttaaaaataatttgatacattgagacaaagtgtgtcgagaaaaagatgagggtgggttcattctaata |
11786742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 11798990 - 11798909
Alignment:
| Q |
38 |
tgcttttttaaaatttaaaaataatttgatacattgagacaaagtgtgttgagaaaacgacgaggctggcttcattctaata |
119 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||| |||||||||||| |
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| T |
11798990 |
tgctttttttaaatttaaaaataatttgatacattgagacaaagtgtgtcgagaaaaagatgagggtgggttcattctaata |
11798909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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