View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_high_6 (Length: 466)
Name: NF18415_high_6
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 54435788 - 54435967
Alignment:
| Q |
19 |
gagaaatgcccctcttaaaaaatcttaaagttaatttgtaccccaaaaattcttctgtttaaaacaatcattaattatatatttttaagacaataatttc |
118 |
Q |
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| T |
54435788 |
gagaaatgcccctcttaaaaaatcttaaagttaatttgtaccccaaaaattcttctgtttaaaataatcattaattatatatttttaagacaataatttc |
54435887 |
T |
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| Q |
119 |
agatactctcaccgttacattttagttgtcgcattcgttgaaaaattgtgttcctataatgtaaaaattttggtatacgt |
198 |
Q |
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| T |
54435888 |
agatactctcaccgttacattttagttgtcgcattcgttgaaaaattgtgttcctataatgtaaaaattttggtatacgt |
54435967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 54436005 - 54436071
Alignment:
| Q |
236 |
ggattaatttataagataggttgaaataacaataaataagagtttttcaataaagagaggtcgagtt |
302 |
Q |
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| T |
54436005 |
ggattaatttataagataggttgaaataacaataaataagagtttttcaataaagagaggtcgagtt |
54436071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 54437527 - 54437608
Alignment:
| Q |
353 |
tagttaaaaaagggtaattacatccgttttcatctggttttttctacgttaccccttcataaattaaggaaaatttacccta |
434 |
Q |
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| T |
54437527 |
tagttaaaaaagggtaattacatccgtcttcatttggttttttctacgttaccccttcataaattaagggtaatttacccta |
54437608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 54436071 - 54436114
Alignment:
| Q |
319 |
tgctcacagcatgatgaaataggactagaccacatagttaaaaa |
362 |
Q |
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| T |
54436071 |
tgctcccagtatgatgaaataggactagaccacgtagttaaaaa |
54436114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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