View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_high_7 (Length: 461)

Name: NF18415_high_7
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_high_7
NF18415_high_7
[»] chr4 (2 HSPs)
chr4 (1-446)||(33879214-33879659)
chr4 (1-39)||(33878620-33878658)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-55)||(676-730)
scaffold0386 (2-39)||(1296-1333)
[»] chr8 (2 HSPs)
chr8 (1-55)||(38460891-38460945)
chr8 (1-39)||(38460427-38460465)
[»] chr5 (4 HSPs)
chr5 (1-55)||(13869836-13869890)
chr5 (1-55)||(27641440-27641494)
chr5 (1-35)||(13869240-13869274)
chr5 (1-35)||(27640875-27640909)
[»] chr7 (1 HSPs)
chr7 (2-55)||(29735101-29735154)
[»] chr3 (2 HSPs)
chr3 (1-39)||(49850835-49850873)
chr3 (1-39)||(49851433-49851471)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 33879214 - 33879659
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaaccggaaacatttcattataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33879214 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctcatttactttagtcataaattgaaaccagaaacatttcattataaa 33879313  T
Q  101 ttgaaactagaaaaatttcatattcaaaagagacttgagagaaacaaacttcaccataagaaaataaaacaagaagagatttgaataattaaaaaataac 200  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33879314 ttgaaactagaaaaatttcatactcgaaagagacttgagagaaacaaacttcaccatatgaaaataaaacaagaagagatttgaataattaaaaaataac 33879413  T
Q  201 cacgatcatgcatgcagttagttattaggtactctcgttcttccatcccaaagcttgtttgatcattgccattgctttctcgcagattccactcccagca 300  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879414 catgatcatgcatgcagttagttattaggtactctccttcttccatcccaaagcttgtttgatcattgccattgctttctcgcagattccactcccagca 33879513  T
Q  301 ttgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879514 ttgacttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacg 33879613  T
Q  401 acacctgaaaagattccctaacctcaataaccgtcgaagaattgtc 446  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  33879614 acacctgaaaagactccctaacctcaataaccgtcgaagaattgtc 33879659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33878658 - 33878620
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33878658 cattggatgtttgtaagtgccacatgttatgtacgtttc 33878620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 730 - 676
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  730 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 1296 - 1333
Alignment:
Q  2 attggatgtttgtaagtgccacatgttatgtacgtttc 39  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1296 attggatgtttgtaagtgtcacatgttatgtacgtttc 1333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38460891 - 38460945
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38460891 cattggatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 38460945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38460465 - 38460427
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38460465 cattggatgtttgtaagtgccacatgttatgtacgtttc 38460427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13869836 - 13869890
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 55  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13869836 cattgaatgtttgtaagtgccacatgttatgtacgtttctatgtaaaaatttctc 13869890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27641440 - 27641494
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 55  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  27641440 cattgaatgtttgtaagtgccacatgatatgtacgtttctatgtaaaaatttctc 27641494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13869274 - 13869240
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13869274 cattggatgtttgtaagtgccacatgttatgtacg 13869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27640909 - 27640875
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27640909 cattggatgtttgtaagtgccacatgttatgtacg 27640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 29735154 - 29735101
Alignment:
Q  2 attggatgtttgtaagtgccacatgttatgtacgtttccatgtaaaaatttctc 55  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  29735154 attggatgtttgtaagtgccacatgttatgtaagtttctatgtaagaatttctc 29735101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49850873 - 49850835
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttc 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  49850873 cattgaatgtttgtaagtgccacatgttatgtacgtttc 49850835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49851433 - 49851471
Alignment:
Q  1 cattggatgtttgtaagtgccacatgttatgtacgtttc 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  49851433 cattggatgtttgtaagtgccacatgttatgtatgtttc 49851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University