View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_10 (Length: 443)
Name: NF18415_low_10
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 44827914 - 44827529
Alignment:
| Q |
10 |
aagaaaatccaagcacttgtctgactcaatagaaggacaagctgaggaggagtctattccttcggattggaaacttttggaaaaagaattatacttgaag |
109 |
Q |
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| T |
44827914 |
aagaaaatccaagcacttgtctgactcaatagaaggacaagctgaggaggagtctattccttcggattggaaacttttggaaaaagaattatacttgaag |
44827815 |
T |
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| Q |
110 |
ggaatagaaatgtttgggagaaataggtataaaaatctttctcatttttcacctcatatttaagctaagtccatttttctcatgttttggcttatatgca |
209 |
Q |
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| T |
44827814 |
ggaatagaaatgtttgggagaaataggtataaaaatctttctcatttttcacctcacatttaagctaagtccatttttctaatgttttggcttatatgca |
44827715 |
T |
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| Q |
210 |
atttatgctttgcagttgtcttatagctaagaacatactttttatgatgaagacttgtacggaagttgctagatacatgtatgctgaagagtcaatgcca |
309 |
Q |
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| T |
44827714 |
atttatgctttgcagttgtcttatagctaagaacatactttttatgatgaagacttgcacggaagttgctagatacatgtatgctgaagagtcaatccca |
44827615 |
T |
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| Q |
310 |
catggatccatgagcgaaaatggacaatcaaatgcaatgcgcattgtgagtacaatcattcatttcatatccccatctcctttgtg |
395 |
Q |
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| T |
44827614 |
catggatccatgggcgaaaatggacaatcaaatgcaatgcgcattgtgagtacaatcattcatttcatatccccatctcctttgtg |
44827529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 8371460 - 8371351
Alignment:
| Q |
222 |
cagttgtcttatagctaagaacatactttttatgatgaagacttgtacggaagttgctagatacatgtatgctgaagagtcaatgccacatggatccatg |
321 |
Q |
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| T |
8371460 |
cagttgccttatatcgaagaacttacttttcatgatgaagacttgcaaggaagttgctagctacatgtatgctgaagttccaatgccacatggatccatg |
8371361 |
T |
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| Q |
322 |
agcgaaaatg |
331 |
Q |
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| T |
8371360 |
agcgaaaatg |
8371351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 331
Target Start/End: Complemental strand, 8370068 - 8369951
Alignment:
| Q |
214 |
atgctttgcagttgtcttatagctaagaacatactttttatgatgaagacttgtacggaagttgctagatacatgtatgctgaagagtcaatgccacatg |
313 |
Q |
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| T |
8370068 |
atgctatgcagttgccttatatcgaagaacttactttttatgatgaagacttgcaaggaagttgctagctacatgtatgatgaagttccaatgtcacatg |
8369969 |
T |
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| Q |
314 |
gatccatgagcgaaaatg |
331 |
Q |
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| T |
8369968 |
gatccatggacgaaaatg |
8369951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 8371623 - 8371539
Alignment:
| Q |
75 |
attggaaacttttggaaaaagaattatacttgaagggaatagaaatgtttgggagaaataggtataaaaatctttctcatttttcac |
161 |
Q |
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| T |
8371623 |
attggaaacttttggagaaagaactatgtatgaagggaatagaaatgtttgggagaaataggtat--gaatctttcttatttttcac |
8371539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 8370222 - 8370139
Alignment:
| Q |
76 |
ttggaaacttttggaaaaagaattatacttgaagggaatagaaatgtttgggagaaataggtataaaaatctttctcatttttcac |
161 |
Q |
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| T |
8370222 |
ttggaaacttttggagaaagatttatgtctgaagggaatagaaatgtttgggagaaataggtat--gaatctttcttatttttcac |
8370139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 38936293 - 38936358
Alignment:
| Q |
74 |
gattggaaacttttggaaaaagaattatacttgaagggaatagaaatgtttgggagaaataggtat |
139 |
Q |
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| T |
38936293 |
gattggaaacctctagagaaagagttatacttgaagggagtggaaatgtttggcagaaacaggtat |
38936358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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