View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_11 (Length: 432)
Name: NF18415_low_11
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 60 - 416
Target Start/End: Original strand, 40420269 - 40420631
Alignment:
| Q |
60 |
gggataaacacagcacaaatatttctattgcacttaaacattttagaaagcccgtccacggggttcgaatcccgaacnnnnnnnnn------tttagaaa |
153 |
Q |
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| T |
40420269 |
gggataaacacaacacaaatgtttctattgcacttaaacattttagaaagtcggtccacggggttcgaatcccaaacacaaaaaaaaaacattttagaaa |
40420368 |
T |
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| Q |
154 |
gcccataaacacaacaaaatgtcatgaaccgaaaaggtggcaacgaaagaaccttttggaaggtaaccagcatcaaattaccttctgaatcttgttagct |
253 |
Q |
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| T |
40420369 |
gcccataaacacaacaaaatgtgatgaaccgaaaaggtggcaacgaaagaaccttttggagggtaaccagcatcaaattaccttctgaatcttgttagct |
40420468 |
T |
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| Q |
254 |
tgcacgaactgtcataagcatttaaatgtactattcaatgtaaatatggaataagccttcatttccattcttttaagcaattctatagattcacataaca |
353 |
Q |
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| T |
40420469 |
tgcacgaactgtcataagcatttaaatgtactatttaatgtaaatatggaataagccttcatttccattcttttaagcaattctacagattcacataaca |
40420568 |
T |
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| Q |
354 |
aaatcaatgcacttcaggtttgaggcttagatgagagtgtgtttctcctcaatatctcatatt |
416 |
Q |
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| T |
40420569 |
aaatcagtgcacttcaggtttgaggcttagatgagagtgtgtttctcctcaatatctcatatt |
40420631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 27609812 - 27609927
Alignment:
| Q |
170 |
aaatgtcatgaaccgaaaaggtggcaacgaaagaaccttttggaaggtaaccagcatcaaattaccttctgaatcttgttagcttgcacgaactgtcata |
269 |
Q |
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| T |
27609812 |
aaatgtcatgcactggaaaggtggaaaagaaagaaccttttggagggtaaccagcatc-atttaccttctgagtcttgggagcttgcacacactgacata |
27609910 |
T |
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| Q |
270 |
agcat-ttaaatgtact |
285 |
Q |
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| T |
27609911 |
agcatattaaatgtact |
27609927 |
T |
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