View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_low_12 (Length: 428)

Name: NF18415_low_12
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_low_12
NF18415_low_12
[»] chr8 (2 HSPs)
chr8 (13-402)||(32820191-32820574)
chr8 (188-311)||(38445203-38445329)
[»] chr7 (4 HSPs)
chr7 (188-313)||(42440808-42440933)
chr7 (236-313)||(36500797-36500874)
chr7 (273-313)||(6555078-6555118)
chr7 (273-313)||(49057340-49057380)
[»] chr4 (8 HSPs)
chr4 (188-313)||(32973070-32973195)
chr4 (233-313)||(28496489-28496569)
chr4 (76-127)||(38099428-38099477)
chr4 (76-127)||(38123065-38123114)
chr4 (235-305)||(11395040-11395110)
chr4 (235-305)||(11404767-11404837)
chr4 (244-314)||(56521867-56521937)
chr4 (187-248)||(55390514-55390575)
[»] scaffold0245 (1 HSPs)
scaffold0245 (195-314)||(16036-16155)
[»] chr1 (2 HSPs)
chr1 (195-314)||(1289631-1289750)
chr1 (273-313)||(43491366-43491406)
[»] chr2 (1 HSPs)
chr2 (79-126)||(29365488-29365537)
[»] scaffold0050 (1 HSPs)
scaffold0050 (265-313)||(51644-51692)
[»] chr5 (1 HSPs)
chr5 (274-306)||(30097457-30097489)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 32820191 - 32820574
Alignment:
Q  13 aaaatcacaaatgagtctagaagtatacatccacacgacacaaaaatttaatttgtctggaaatacacatccggacggcacaaaaactgtgtttttcttt 112  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32820191 aaaatcacaaatgagtctggaagtatacatccagacgacacaaaaatttaatttgtctggaaatacacatccggacggcacaaaaactgtgtttttcttt 32820290  T
Q  113 tcagatgtgtacatccaaagtgacatcggatggaaaaagttcctccctcagtttttgatgtctctgaccgcagcatattgaaaaaaccaagtcccacata 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32820291 tcagatgtgtacatccaaagtgacttcggatggaaaaagttcctccctcagtttttgatgtctctgaccgcagcatattgaaaaaaccaagtcccacata 32820390  T
Q  213 gaatgaacataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaaacctaat 312  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  32820391 gaatgaacataaggtttgactagagtttataaagagtgacgtccctcaactcacaaactagttttgtaaggatgagttagacttaatataaaaacctaat 32820490  T
Q  313 acaacgcgattgcaattgagatctgcgattcaaatattgaaaataacagttaacaaaaatgatagaagtgaaagtgatgcagcagcagca 402  Q
    ||||||||      ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32820491 acaacgcg------attgagatctgcgattcaaatcttgaaaataacagttaacaaaaatgatagaagtgaaagtgaggcagcagcagca 32820574  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 38445203 - 38445329
Alignment:
Q  188 tattgaaaaaaccaagtcccacatagaatgaac---ataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataagga 284  Q
    ||||| ||||||||||||||| ||||| | ||    |||||||||||||| |||| ||||||||||||  || ||| || |||| | |||||| ||||||    
T  38445203 tattggaaaaaccaagtcccatatagattaaatgttataaggtttgactaaagtttataaagagtgacacccttcatcttacaagcgagttttgtaagga 38445302  T
Q  285 tgagttagacttaatataaaaacctaa 311  Q
    ||| |||| |  |||||||||||||||    
T  38445303 tgacttaggcacaatataaaaacctaa 38445329  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 42440808 - 42440933
Alignment:
Q  188 tattgaaaaaaccaagtcccacatagaatgaacataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatga 287  Q
    ||||| |||||||||||||| |||| | | || |||||||  |||||||||| |||||||| ||| ||||||| ||  |||||| ||||| |||||||||    
T  42440808 tattggaaaaaccaagtcccccataaattaaagataaggtccgactagagtttataaagagagacatccctcaccttgcaaaccggttttgtaaggatga 42440907  T
Q  288 gttagacttaatataaaaacctaata 313  Q
    ||||| || | ||||||| |||||||    
T  42440908 gttaggctcagtataaaaccctaata 42440933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 36500874 - 36500797
Alignment:
Q  236 agttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaaacctaata 313  Q
    |||| ||||||||||||  |||||| |  |||||||| ||||||||||||||||||| |  |||| ||||| ||||||    
T  36500874 agtttataaagagtgacacccctcaccctacaaaccaattttataaggatgagttaggcccaatacaaaaatctaata 36500797  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 6555118 - 6555078
Alignment:
Q  273 gttttataaggatgagttagacttaatataaaaacctaata 313  Q
    ||||| |||||||||||| |||| |||||||||||||||||    
T  6555118 gttttgtaaggatgagtttgactaaatataaaaacctaata 6555078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 49057340 - 49057380
Alignment:
Q  273 gttttataaggatgagttagacttaatataaaaacctaata 313  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  49057340 gttttgtaaggatgagttagactcaacataaaaacctaata 49057380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 32973070 - 32973195
Alignment:
Q  188 tattgaaaaaaccaagtcccacatagaatgaacataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatga 287  Q
    ||||| |||||| || |||||||| || | || |||||   ||||||||||| |||||||| | |  | |||| || |||| |||||||| |||||||||    
T  32973070 tattggaaaaacgaactcccacatcgattaaatataagacctgactagagtttataaagagcggcacctctcaccttacaagccagttttgtaaggatga 32973169  T
Q  288 gttagacttaatataaaaacctaata 313  Q
    |||||||  |||||||||||||||||    
T  32973170 gttagaccaaatataaaaacctaata 32973195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 28496569 - 28496489
Alignment:
Q  233 tagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaaacctaata 313  Q
    ||||||| |||||||||| |  |||||| || |||| || ||||| |||||||||||||| || |||||||||||||||||    
T  28496569 tagagtttataaagagtggcacccctcaccttacaagccggttttgtaaggatgagttaggctcaatataaaaacctaata 28496489  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 38099477 - 38099428
Alignment:
Q  76 tacacatccggacggcacaaaaactgtgtttttcttttcagatgtgtacatc 127  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  38099477 tacacatccggacggcacaaaaattgtg--tttgttttcagatgtgtacatc 38099428  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 38123114 - 38123065
Alignment:
Q  76 tacacatccggacggcacaaaaactgtgtttttcttttcagatgtgtacatc 127  Q
    ||||||||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  38123114 tacacatccggacggcacaaaaattgtg--tttgttttcagatgtgtacatc 38123065  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 11395040 - 11395110
Alignment:
Q  235 gagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaa 305  Q
    ||||| |||||||||||| | |||||||| ||||  | |||||  |||||||||||||||| |||||||||    
T  11395040 gagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactcaatataaaa 11395110  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 11404767 - 11404837
Alignment:
Q  235 gagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaa 305  Q
    ||||| |||||||||||| | |||||||| ||||  | |||||  |||||||||||||||| |||||||||    
T  11404767 gagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactcaatataaaa 11404837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 56521937 - 56521867
Alignment:
Q  244 aagagtgacgtccctcaactcacaaaccagttttataaggatgagttagacttaatataaaaacctaatac 314  Q
    |||||||||  || |||| | |||| || |||||||||  |||||||||||| ||||||||||||||||||    
T  56521937 aagagtgacacccttcaaattacaagccggttttataaaaatgagttagactcaatataaaaacctaatac 56521867  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 55390575 - 55390514
Alignment:
Q  187 atattgaaaaaaccaagtcccacatagaatgaacataaggtttgactagagttaataaagag 248  Q
    |||||| |||||||||| ||||| |||| | || |||||| |||||||||||| ||||||||    
T  55390575 atattggaaaaaccaagccccacttagattaaagataaggcttgactagagtttataaagag 55390514  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 16155 - 16036
Alignment:
Q  195 aaaaccaagtcccacatagaatgaacataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagac 294  Q
    ||||||||||||||||| || | || ||||||  ||||||||||| |||||||||| |  |||||| || |||| || ||||| || |||||||||| ||    
T  16155 aaaaccaagtcccacattgattaaagataaggcctgactagagtttataaagagtggcacccctcaccttacaagccggttttgtacggatgagttaaac 16056  T
Q  295 ttaatataaaaacctaatac 314  Q
      |||||||||  |||||||    
T  16055 ccaatataaaagtctaatac 16036  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 1289750 - 1289631
Alignment:
Q  195 aaaaccaagtcccacatagaatgaacataaggtttgactagagttaataaagagtgacgtccctcaactcacaaaccagttttataaggatgagttagac 294  Q
    ||||||||||||||||| || | || ||||||  ||||||||||| |||||||||| |  |||||| || |||| || ||||| || |||||||||| ||    
T  1289750 aaaaccaagtcccacattgattaaagataaggcctgactagagtttataaagagtggcacccctcaccttacaagccggttttgtacggatgagttaaac 1289651  T
Q  295 ttaatataaaaacctaatac 314  Q
      |||||||||  |||||||    
T  1289650 ccaatataaaagtctaatac 1289631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 43491406 - 43491366
Alignment:
Q  273 gttttataaggatgagttagacttaatataaaaacctaata 313  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  43491406 gttttttaaggatgagttagacccaatataaaaacctaata 43491366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 29365488 - 29365537
Alignment:
Q  79 acatccggacggcacaaaaactgtgtttttctttt--cagatgtgtacat 126  Q
    |||||||||| ||||||||||||||||||| ||||  |||||||||||||    
T  29365488 acatccggaccgcacaaaaactgtgtttttttttttccagatgtgtacat 29365537  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 51644 - 51692
Alignment:
Q  265 acaaaccagttttataaggatgagttagacttaatataaaaacctaata 313  Q
    ||||||| ||||| |||||||||||||| | |||||||||||| |||||    
T  51644 acaaaccggttttgtaaggatgagttaggcctaatataaaaacttaata 51692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 30097457 - 30097489
Alignment:
Q  274 ttttataaggatgagttagacttaatataaaaa 306  Q
    ||||||||||||||||||||| |||||||||||    
T  30097457 ttttataaggatgagttagacataatataaaaa 30097489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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