View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_low_13 (Length: 423)
Name: NF18415_low_13
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 45 - 413
Target Start/End: Complemental strand, 52365737 - 52365369
Alignment:
| Q |
45 |
ttccacgctattttaaagtactttatcctccttcgaagaagaaaaacgatttagatgattagttcaaaaagttcatggaggtattcactaatttacaggt |
144 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52365737 |
ttccacgctatttcaaagtactttatcatccttcgaagaagaaaaacgatttagattattagttcaaaaagttcatggaggtattcactaaattacaggt |
52365638 |
T |
|
| Q |
145 |
tacgtttgctgatgtgttggtccatgtttctgcgtattataagtttatgaaagacttgctctaaatttttgataattcctagactaaggacattgatatc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52365637 |
tacgtttgctgatgtgttggtccatgtttctgcgtattataagtttatgaaagacttactctaaatttttgataattcctagactaaggacattgatatc |
52365538 |
T |
|
| Q |
245 |
tagttgtatattatatttatgctcccataaaatgctaattatagtttagcttttatatgtaggcaagctaataaagccgctaataatcttgctacagtgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52365537 |
tagttgtatattatatttatgctcccataaaatgctaattatagtttagcttttatatgtaggcaagctaataaagccgctaataatcttgctacagtgt |
52365438 |
T |
|
| Q |
345 |
ttgtatttctgtttaacctgagnnnnnnnattctcttccttattgtgttgcaaactttattattgatga |
413 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52365437 |
ttgtatttcggtttaacctgagtttttttattctcttccttattgtattgcaaactttattattgatga |
52365369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University