View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_14 (Length: 422)
Name: NF18415_low_14
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 25988531 - 25988131
Alignment:
| Q |
10 |
catcatcacctttgatcaagcttgtagcattttctgtgccacaaacaaacattgagatcaacaacaaagcttgatgagagattggaaaatgagcttttaa |
109 |
Q |
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| T |
25988531 |
catcatcacctttgatcaagcttgtagcattttctatgccacaaacaaacattgagatcaacaacaaagcttgatgagagattggaaaatgagcttttaa |
25988432 |
T |
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| Q |
110 |
ggaaaatagtgaagcctcgttttgatgaatagtgaatgtgtattagaagatagaattaagaaagtgaggtgtagattttggtggatactttttgagctgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988431 |
ggaaaatagtgaagcctcgttttgatgaatagtgaatgtgtattagaagatagaattaagaaagtgaggtgtagattttggtggatactttttgagctgt |
25988332 |
T |
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| Q |
210 |
aataatgatgatagtcatagtagtagtattagtaccctccacaactgtttcaaagttgcacgaacataactactagcaccttcttttgcgttacagtgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25988331 |
aataatgatgatagtcatagtagtagtattagtaccctccacaactgtttcaaagttgcacgaacataactactagcaccttcttttgcgttacggtgtt |
25988232 |
T |
|
| Q |
310 |
tcatgtttttcaacggtgtttaatgttttgtgttgtaacgttacacttgttaaactaacttgtcattt------cttaactttcctatgacacttcatta |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25988231 |
tcatgtttttcaacggtgtttaatgttttgtgttgtaacgttacacttgttaaactaacttgtcatttcttattcttaactttcctatgacacttcatta |
25988132 |
T |
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| Q |
404 |
t |
404 |
Q |
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| T |
25988131 |
t |
25988131 |
T |
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