View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_16 (Length: 401)
Name: NF18415_low_16
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 38569249 - 38568886
Alignment:
| Q |
20 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
119 |
Q |
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| T |
38569249 |
acataacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgc |
38569150 |
T |
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| Q |
120 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
219 |
Q |
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| T |
38569149 |
tattggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgac |
38569050 |
T |
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| Q |
220 |
caagtgaccaaggtaacataaaaccatgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcagggagtgtc |
319 |
Q |
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| T |
38569049 |
caagtgaccaaggtaacataaaaccatgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtc |
38568950 |
T |
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| Q |
320 |
gtgtccgaacacctgcatatcaacatctttgcagctataccaaacgagctgtacttatgggatg |
383 |
Q |
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| T |
38568949 |
gtgtccgaacacctgcatatcaacatctttgcagctataccaaacgagctgtacttatgggatg |
38568886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 38527832 - 38527615
Alignment:
| Q |
24 |
aacaaaagaaaaacaagagacagtaccatttcacaaattattctcttttgcagattccactgacattctgttaatgattgttggtactattggtgctatt |
123 |
Q |
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| T |
38527832 |
aacaaaagaaaaacaagagacagttccatttcacaaactattcacttttgcagattctactgacattttattaatgattgttggtactatcggtgctatt |
38527733 |
T |
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| Q |
124 |
ggaaatggtttgggtttacctatcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaag |
223 |
Q |
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| T |
38527732 |
ggaaacggtttgggtttacctcttatgacattattgttcggtcaaatgattgatagttttggtagtaaccaaagtaacaccaccgatgttgtagaacaag |
38527633 |
T |
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| Q |
224 |
tgaccaaggtaacataaa |
241 |
Q |
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| T |
38527632 |
tgtccaaggtatcataaa |
38527615 |
T |
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