View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_18 (Length: 364)
Name: NF18415_low_18
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4150346 - 4150452
Alignment:
| Q |
1 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgactattggtttaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4150346 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgactattggtttaggaaa |
4150445 |
T |
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| Q |
101 |
aacatag |
107 |
Q |
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||||||| |
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| T |
4150446 |
aacatag |
4150452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4166115 - 4166221
Alignment:
| Q |
1 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgactattggtttaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4166115 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgactattggtttaggaaa |
4166214 |
T |
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| Q |
101 |
aacatag |
107 |
Q |
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||||||| |
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| T |
4166215 |
aacatag |
4166221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
| Q |
179 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
278 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4150524 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4150623 |
T |
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| Q |
279 |
caaaacttgaaattgctgaaaa |
300 |
Q |
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|||||||||||||||||||||| |
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| T |
4150624 |
caaaacttgaaattgctgaaaa |
4150645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
| Q |
179 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
278 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4166293 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4166392 |
T |
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| Q |
279 |
caaaacttgaaattgctgaaaa |
300 |
Q |
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|||||||||||||||||||||| |
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| T |
4166393 |
caaaacttgaaattgctgaaaa |
4166414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 4150693 - 4150763
Alignment:
| Q |
291 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaactttt |
361 |
Q |
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| T |
4150693 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaactttt |
4150763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 4166462 - 4166532
Alignment:
| Q |
291 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaactttt |
361 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166462 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaactttt |
4166532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
1 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
78 |
Q |
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|||||||| |||||||||||||||||||| || ||| ||||||||||| || |||||| |||||||| |||||||| |
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| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
11 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
78 |
Q |
| |
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|||| ||||||||||||||| || |||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
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