View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_low_2 (Length: 959)

Name: NF18415_low_2
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_low_2
NF18415_low_2
[»] scaffold0312 (1 HSPs)
scaffold0312 (11-942)||(10466-11396)
[»] chr1 (27 HSPs)
chr1 (11-942)||(419175-420105)
chr1 (158-942)||(975056-975838)
chr1 (333-762)||(936430-936862)
chr1 (333-942)||(960125-960743)
chr1 (333-871)||(942241-942782)
chr1 (333-871)||(949230-949771)
chr1 (333-871)||(971511-972052)
chr1 (316-743)||(909699-910123)
chr1 (333-739)||(924236-924639)
chr1 (353-739)||(916185-916568)
chr1 (49-120)||(29833349-29833420)
chr1 (826-942)||(924033-924149)
chr1 (49-116)||(2404101-2404168)
chr1 (15-52)||(10909246-10909283)
chr1 (15-52)||(29834000-29834037)
chr1 (910-942)||(942176-942208)
chr1 (910-942)||(971446-971478)
chr1 (16-52)||(13011835-13011871)
chr1 (49-120)||(734852-734923)
chr1 (15-49)||(734588-734622)
chr1 (912-942)||(949153-949183)
chr1 (826-887)||(916037-916098)
chr1 (15-52)||(2403844-2403881)
chr1 (15-52)||(8933558-8933595)
chr1 (49-106)||(8933831-8933888)
chr1 (15-52)||(10911489-10911526)
chr1 (15-52)||(29833085-29833122)
[»] chr2 (13 HSPs)
chr2 (54-120)||(34576892-34576958)
chr2 (58-120)||(29801814-29801876)
chr2 (49-120)||(31489006-31489077)
chr2 (15-52)||(5164160-5164197)
chr2 (54-115)||(23859825-23859886)
chr2 (15-52)||(31487023-31487060)
chr2 (15-52)||(31489307-31489344)
chr2 (15-52)||(42275565-42275602)
chr2 (15-52)||(42277791-42277828)
chr2 (49-120)||(31486722-31486793)
chr2 (15-52)||(8995079-8995116)
chr2 (15-52)||(15730053-15730090)
chr2 (15-52)||(39816098-39816135)
[»] chr5 (12 HSPs)
chr5 (64-136)||(1779748-1779820)
chr5 (49-120)||(11852439-11852510)
chr5 (49-120)||(23164514-23164585)
chr5 (49-120)||(1779499-1779570)
chr5 (49-120)||(11850181-11850252)
chr5 (49-120)||(37207711-37207782)
chr5 (15-52)||(11849926-11849963)
chr5 (15-52)||(11852184-11852221)
chr5 (10-52)||(21743751-21743793)
chr5 (54-120)||(22600751-22600817)
chr5 (15-52)||(23164263-23164300)
chr5 (57-102)||(37207639-37207684)
[»] chr8 (13 HSPs)
chr8 (49-120)||(21268403-21268474)
chr8 (49-120)||(36377456-36377527)
chr8 (49-120)||(36379741-36379812)
chr8 (15-52)||(4877130-4877167)
chr8 (15-52)||(4879458-4879495)
chr8 (15-52)||(24519162-24519199)
chr8 (15-52)||(36379474-36379511)
chr8 (57-102)||(4876819-4876864)
chr8 (57-102)||(4879147-4879192)
chr8 (15-52)||(21268129-21268166)
chr8 (57-102)||(21268501-21268546)
chr8 (57-102)||(24519466-24519511)
chr8 (19-52)||(36377193-36377226)
[»] chr7 (23 HSPs)
chr7 (49-120)||(8733768-8733839)
chr7 (49-120)||(3932554-3932625)
chr7 (49-120)||(3934793-3934864)
chr7 (49-120)||(36464497-36464568)
chr7 (49-120)||(42678852-42678923)
chr7 (49-120)||(8414764-8414835)
chr7 (15-52)||(3932853-3932890)
chr7 (15-52)||(3935092-3935129)
chr7 (15-52)||(18395451-18395488)
chr7 (15-52)||(19786920-19786957)
chr7 (15-52)||(19789226-19789263)
chr7 (81-120)||(3052039-3052078)
chr7 (57-102)||(3932512-3932557)
chr7 (57-102)||(3934751-3934796)
chr7 (15-52)||(8414499-8414536)
chr7 (15-52)||(8731185-8731222)
chr7 (15-52)||(16496962-16496999)
chr7 (63-120)||(16497156-16497213)
chr7 (57-102)||(16497180-16497225)
chr7 (15-52)||(16535144-16535181)
chr7 (15-52)||(16630481-16630518)
chr7 (15-52)||(36464222-36464259)
chr7 (15-52)||(42678580-42678617)
[»] chr3 (3 HSPs)
chr3 (49-136)||(18966398-18966485)
chr3 (15-52)||(4530974-4531011)
chr3 (15-52)||(4533271-4533308)
[»] scaffold0050 (5 HSPs)
scaffold0050 (84-136)||(31475-31527)
scaffold0050 (84-136)||(29157-29209)
scaffold0050 (57-120)||(29143-29206)
scaffold0050 (15-52)||(29468-29505)
scaffold0050 (15-52)||(31783-31820)
[»] chr4 (14 HSPs)
chr4 (49-120)||(45166910-45166981)
chr4 (15-52)||(13774290-13774327)
chr4 (15-52)||(13776587-13776624)
chr4 (15-52)||(42468448-42468485)
chr4 (15-52)||(42470777-42470814)
chr4 (15-52)||(45162318-45162355)
chr4 (15-52)||(50855780-50855817)
chr4 (49-120)||(45162018-45162089)
chr4 (15-52)||(19429085-19429122)
chr4 (57-102)||(42468751-42468796)
chr4 (57-102)||(42471080-42471125)
chr4 (57-102)||(45161976-45162021)
chr4 (57-102)||(45166868-45166913)
chr4 (49-102)||(50856035-50856088)
[»] scaffold0599 (1 HSPs)
scaffold0599 (15-52)||(1755-1792)
[»] scaffold1361 (1 HSPs)
scaffold1361 (15-49)||(97-131)
[»] scaffold0008 (3 HSPs)
scaffold0008 (57-102)||(73074-73119)
scaffold0008 (83-120)||(73116-73153)
scaffold0008 (15-52)||(88485-88522)


Alignment Details
Target: scaffold0312 (Bit Score: 862; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 11 - 942
Target Start/End: Complemental strand, 11396 - 10466
Alignment:
Q  11 cagagacaaaaggaatggtagagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttc 110  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11396 cagagacaaaagaaatggtagagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttc 11297  T
Q  111 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  11296 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaa 11199  T
Q  211 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaatagga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11198 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaatagga 11099  T
Q  310 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 10999  T
Q  410 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10998 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 10899  T
Q  510 tgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgct 609  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10898 tgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgct 10799  T
Q  610 attgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactcca 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10798 attgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactcca 10699  T
Q  710 atgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgat 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| |||||||||| ||||||||||||||||||||||    
T  10698 atgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgat 10599  T
Q  810 gtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtctta 909  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10598 gtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtctta 10499  T
Q  910 gtgaattgcaagttcaattttgttccatgatgc 942  Q
    |||||||||||||||| ||||||||||||||||    
T  10498 gtgaattgcaagttcagttttgttccatgatgc 10466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 862; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 11 - 942
Target Start/End: Original strand, 419175 - 420105
Alignment:
Q  11 cagagacaaaaggaatggtagagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttc 110  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419175 cagagacaaaagaaatggtagagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttc 419274  T
Q  111 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  419275 tagagacttctgcatttttctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaa 419372  T
Q  211 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaatagga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  419373 agtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaatagga 419472  T
Q  310 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419473 tttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgcca 419572  T
Q  410 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419573 aatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagt 419672  T
Q  510 tgtatctgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgct 609  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  419673 tgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgct 419772  T
Q  610 attgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactcca 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419773 attgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactcca 419872  T
Q  710 atgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgat 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| |||||||||| ||||||||||||||||||||||    
T  419873 atgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgat 419972  T
Q  810 gtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtctta 909  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  419973 gtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtctta 420072  T
Q  910 gtgaattgcaagttcaattttgttccatgatgc 942  Q
    |||||||||||||||| ||||||||||||||||    
T  420073 gtgaattgcaagttcagttttgttccatgatgc 420105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 158 - 942
Target Start/End: Complemental strand, 975838 - 975056
Alignment:
Q  158 agcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 257  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975838 agcacacttgtaataatccatcata--gcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 975741  T
Q  258 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975740 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 975641  T
Q  358 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatag 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975640 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatag 975541  T
Q  458 ctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattctcttt 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  975540 ctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctcttt 975441  T
Q  558 gtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaaca 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975440 gtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaaca 975341  T
Q  658 gcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcac 757  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975340 gcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcac 975241  T
Q  758 actcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtat 857  Q
    |||||  || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  975240 actcactgatggtgttcttcacaatctgaacaccctttgaccctttcttgatgtttaacttgttgattatgtattccatcttgtttgatgaaaagggtat 975141  T
Q  858 tgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgc 942  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  975140 tgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttttgttccatgatgc 975056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 333 - 762
Target Start/End: Complemental strand, 936862 - 936430
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||| |||     
T  936862 ccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaa 936763  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  936762 gtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgacagtaaa 936663  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaa---att 629  Q
    | ||||| ||||||||| |||||||||||||||| |||||||| ||||| || ||||| |||||||| |||  ||| |||  ||||| ||| ||   | |    
T  936662 aaactgcataagggtaactctctttgtgacacactacagctttattcttttctcccaatttcttcacaccttttgccattacatattcttgcaagtcact 936563  T
Q  630 actttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttt 729  Q
     |||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  936562 gctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttt 936463  T
Q  730 tcctctcctttgatcccttgctcttcacactca 762  Q
    |||||||||||||| || |  ||||||||||||    
T  936462 tcctctcctttgatgccattttcttcacactca 936430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 333 - 942
Target Start/End: Complemental strand, 960743 - 960125
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  960743 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 960644  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  960643 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 960544  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaa---att 629  Q
    | ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||  |||||||  ||||||||| ||   |||    
T  960543 aaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccatt 960444  T
Q  630 actttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttt 729  Q
    ||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||    
T  960443 actatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttt 960344  T
Q  730 tcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaacttgttgattatgt 829  Q
    ||||| |||||||| || |   |||||||||||   |  ||  ||| |||||| | |||  ||||||| |||| |||||||   |||||||||| |||||    
T  960343 tcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgt 960244  T
Q  830 attccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgc------atttgaagtggtcttagtgaattgcaagtt 923  Q
     |||||  |||||||||||||||||||| |||||||||||||  |  ||||||||| | |   |      ||||||||| ||||   |||||||||||||    
T  960243 tttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagtt 960144  T
Q  924 caattttgttccatgatgc 942  Q
    |||||||||||||||||||    
T  960143 caattttgttccatgatgc 960125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 333 - 871
Target Start/End: Complemental strand, 942782 - 942241
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  942782 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 942683  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  942682 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 942583  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaa---att 629  Q
    | ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||  |||||||  ||||||||| ||   |||    
T  942582 aaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccatt 942483  T
Q  630 actttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttt 729  Q
    ||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||| ||||| ||||    
T  942482 actatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttt 942383  T
Q  730 tcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaacttgttgattatgt 829  Q
    ||||| |||||||| || |   |||||||||||   |  ||  ||| |||||| | |||  ||||||| |||| |||||||   |||||||||| |||||    
T  942382 tcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgt 942283  T
Q  830 attccaccttgtttgatgaaaagggtattgaattagcaactt 871  Q
     |||||  |||||||||||||||||||| |||||||||||||    
T  942282 tttccattttgtttgatgaaaagggtatggaattagcaactt 942241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 333 - 871
Target Start/End: Complemental strand, 949771 - 949230
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  949771 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgat 949672  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    |||||||||||||| ||| |||||| ||||||  || |||||||| |||| ||||| |||||||||||| |||  |||| ||| ||||| ||||||||||    
T  949671 gtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaa 949572  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaa---att 629  Q
    | |||| ||||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||||  ||||||   ||||||||| ||   |||    
T  949571 aaactgtgtaagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccatt 949472  T
Q  630 actttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttt 729  Q
    ||| | ||| | ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||    
T  949471 actatttttatccacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttt 949372  T
Q  730 tcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaacttgttgattatgt 829  Q
    ||||| |||||||| || |   |||||||||||   |  ||  ||| |||||| | |||  ||||||| |||| |||||||   |||||||||| |||||    
T  949371 tcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgt 949272  T
Q  830 attccaccttgtttgatgaaaagggtattgaattagcaactt 871  Q
     |||||  |||||||||||||||||||| |||||||||||||    
T  949271 tttccaatttgtttgatgaaaagggtatggaattagcaactt 949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 333 - 871
Target Start/End: Complemental strand, 972052 - 971511
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  972052 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 971953  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    |||||||||||||| |||||||||| ||||||  || |||||||| |||| ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||||    
T  971952 gtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaa 971853  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaa---att 629  Q
    | ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||||  ||||||   ||||||||| ||   |||    
T  971852 aaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccatt 971753  T
Q  630 actttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttt 729  Q
    ||| | ||| | |||||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||| ||||| ||||    
T  971752 actatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttt 971653  T
Q  730 tcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatctgagcaccctttgaccctttcttgatgtttaacttgttgattatgt 829  Q
    ||||| |||||||| || |   |||||||||||   |  ||  ||| |||||| | |||  ||||||| |||| |||||||   |||||||||| |||||    
T  971652 tcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgt 971553  T
Q  830 attccaccttgtttgatgaaaagggtattgaattagcaactt 871  Q
     |||||  |||||||||||||||||||| |||||||||||||    
T  971552 tttccattttgtttgatgaaaagggtatggaattagcaactt 971511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 316 - 743
Target Start/End: Complemental strand, 910123 - 909699
Alignment:
Q  316 tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt 415  Q
    ||||| ||||||  || ||||||||| ||| |||   |||||| ||| |||||||||| ||| ||  ||||||||||||| |||||||| ||||||||||    
T  910123 tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt 910024  T
Q  416 ttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatc 515  Q
    |  || |||||| ||| ||||||| ||| || | ||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||    
T  910023 taaggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatc 909924  T
Q  516 tgttttgtgacagtaaaacactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgta 615  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||| ||||||||    |||   ||||| ||||  |||||||||||   |||||||  |    
T  909923 tgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaaccaaattg---ttctctcccattttcttcactccgtttgctattaca 909827  T
Q  616 tattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatg 715  Q
    ||||||||||||  |||||||   || ||||||||||||||||  |||||||| || ||||| ||  ||||||||||||||| |||||| ||||||||||    
T  909826 tattgttgtaaaccactttctccatttacttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatg 909727  T
Q  716 ttacacaaaccttttcctctcctttgat 743  Q
    | ||||||| ||||||||||||||||||    
T  909726 tcacacaaagcttttcctctcctttgat 909699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 333 - 739
Target Start/End: Complemental strand, 924639 - 924236
Alignment:
Q  333 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 432  Q
    ||||||||||||| |||  |||| || ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||  |||||| |||     
T  924639 ccaaacaacatgaccctgtggtaagaagtggcaaactggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaa 924540  T
Q  433 gtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaa 532  Q
    ||||||| ||| || | ||||| |||||||||| || |||||||| |||| |||| ||||| | ||||| ||||||||| |  |  ||||||||| ||||    
T  924539 gtatcagagtggcaaatagcaacagctttaactttggttccatcaacaccttccataggcaaatagtaaactttagttgcacgtagtttgtgacaataaa 924440  T
Q  533 acactgcgtaagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaaattact 632  Q
    ||||||  || || |||| |  |   || |||||||||  ||||||||   ||||||||||||| ||||||  ||||||| |||||||||||| || |||    
T  924439 acactgtatatggataatccattggatggcacacaacaattttgttct---cacccaacttcttaactccttttgctattatatattgttgtatatcact 924343  T
Q  633 ttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcc 732  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  924342 ttctttgttcacttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcc 924243  T
Q  733 tctcctt 739  Q
    |||||||    
T  924242 tctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 353 - 739
Target Start/End: Complemental strand, 916568 - 916185
Alignment:
Q  353 gtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagc 452  Q
    |||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||  |||||| ||| |||||| |||| || | |||    
T  916568 gtaggaagtggcaaactggaacagttccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatcattgtggcaaatagc 916469  T
Q  453 aatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcgtaagggtaattc 552  Q
    |  || ||||||| || | ||||||  ||| |||| ||||| | ||||| |||||||||    |  ||||||||| ||||||||||| || || ||| ||    
T  916468 agcagttttaactttggtaccatcaataccttccataggcaaatagtaaactttagttgcccgtaatttgtgacaataaaacactgcatatggataactc 916369  T
Q  553 tctttgtgacacacaacagctttgttcttctcacccaacttcttcactcctgatgctattgtatattgttgtaaattactttctttgttcacttctgttg 652  Q
      |   || |||||||||  ||||||||   ||| ||||||||| ||||||  ||||||| |||||||||||  || ||||||||||||| |||||||||    
T  916368 agtagatggcacacaacaattttgttct---cactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttg 916272  T
Q  653 aaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt 739  Q
    ||||||| |||||||| || ||||| ||||||||||||||||||||||| || || |||||||||||||||  ||||||||||||||    
T  916271 aaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 29833349 - 29833420
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  29833349 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 29833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 942
Target Start/End: Complemental strand, 924149 - 924033
Alignment:
Q  826 atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca 925  Q
    |||| |||||| |||||||||||||| ||||| |||||||||||||  || ||||||||||| ||  |||     | |||||| |||||||||| |||||    
T  924149 atgttttccactttgtttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctccataatctgaggtctttgtgaattgcatgttca 924050  T
Q  926 attttgttccatgatgc 942  Q
    ||||||| |||| ||||    
T  924049 attttgtaccattatgc 924033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 2404101 - 2404168
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagaga 116  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||    
T  2404101 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaga 2404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 10909283 - 10909246
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  10909283 gacaaaaggaaaggtagagaaaatagagaaacactcta 10909246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 29834037 - 29834000
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29834037 gacaaaaggaaaggtagagaaaatagagaaacactcta 29834000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 910 - 942
Target Start/End: Complemental strand, 942208 - 942176
Alignment:
Q  910 gtgaattgcaagttcaattttgttccatgatgc 942  Q
    |||||||||||||||||||||||||||||||||    
T  942208 gtgaattgcaagttcaattttgttccatgatgc 942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 910 - 942
Target Start/End: Complemental strand, 971478 - 971446
Alignment:
Q  910 gtgaattgcaagttcaattttgttccatgatgc 942  Q
    |||||||||||||||||||||||||||||||||    
T  971478 gtgaattgcaagttcaattttgttccatgatgc 971446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 13011871 - 13011835
Alignment:
Q  16 acaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13011871 acaaaaggaaaggtagagaaaatagagaaacactcta 13011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 734852 - 734923
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||| ||||||  ||  ||| |||||||||| ||||||||||||||| ||||| |||||||    
T  734852 tctagtagcttccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttc 734923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 734588 - 734622
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacact 49  Q
    ||||||||||| |||||||||||||||||||||||    
T  734588 gacaaaaggaaaggtagagaaaatagagaaacact 734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 912 - 942
Target Start/End: Complemental strand, 949183 - 949153
Alignment:
Q  912 gaattgcaagttcaattttgttccatgatgc 942  Q
    |||||||||||||||||||||||||||||||    
T  949183 gaattgcaagttcaattttgttccatgatgc 949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 826 - 887
Target Start/End: Complemental strand, 916098 - 916037
Alignment:
Q  826 atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgt 887  Q
    |||| |||||| |||||||||||||| ||||| |||||||| ||||  || |||||||||||    
T  916098 atgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaagaatgt 916037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 2403844 - 2403881
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2403844 gacaaaaggaaaggtagagaaaatagagaaactctcta 2403881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8933558 - 8933595
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    |||||||| || ||||||||||||||||||||||||||    
T  8933558 gacaaaagaaaaggtagagaaaatagagaaacactcta 8933595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 8933831 - 8933888
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagt 106  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||| |||||||||    
T  8933831 tctaatagcttccttattattccatagtattttagagacttccatatttttctttagt 8933888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 10911526 - 10911489
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  10911526 gacaaaaggaaaggtagataaaatagagaaacactcta 10911489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 29833085 - 29833122
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  29833085 gacaaaagggaaggtagagaaaatagagaaacactcta 29833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 34576892 - 34576958
Alignment:
Q  54 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||||||||  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34576892 tagcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttc 34576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 29801876 - 29801814
Alignment:
Q  58 ttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||||||||||||||||  ||| |||| |||||| ||||||||||| ||||||||||||||||    
T  29801876 ttccttattattctttagtattctagatacttccctattattctttggtgttctagagacttc 29801814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 31489077 - 31489006
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| || ||||||||||    
T  31489077 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttc 31489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 5164160 - 5164197
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5164160 gacaaaaggaaaggtagagaaaatagagaaacactcta 5164197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 23859886 - 23859825
Alignment:
Q  54 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagag 115  Q
    ||||||||||||||||   ||  ||| |||||||| ||||||||||||||||||||||||||    
T  23859886 tagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 31487060 - 31487023
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31487060 gacaaaaggaaaggtagagaaaatagagaaacactcta 31487023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 31489344 - 31489307
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  31489344 gacaaaaggaaaggtagagaaaatagagaaacactcta 31489307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42275565 - 42275602
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42275565 gacaaaaggaaaggtagagaaaatagagaaacactcta 42275602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42277791 - 42277828
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42277791 gacaaaaggaaaggtagagaaaatagagaaacactcta 42277828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 31486793 - 31486722
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||| |||| |||||||| ||||    
T  31486793 tctagtagcttccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttc 31486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8995079 - 8995116
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  8995079 gacaaaaggaaaggtagagaaaatagagaaactctcta 8995116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 15730090 - 15730053
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  15730090 gacaaaaggaaaggtagagaaaatagagaaactctcta 15730053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 39816098 - 39816135
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  39816098 gacaaaaggaaaggtagagaaaatagagaaactctcta 39816135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 1779748 - 1779820
Alignment:
Q  64 attattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 136  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||    
T  1779748 attattctttagtattctagagacttccatattattctttagtgttatggagacttccacatttttctttagt 1779820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 11852439 - 11852510
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11852439 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 11852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 23164514 - 23164585
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  23164514 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 23164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 1779499 - 1779570
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| ||||||| |||||    
T  1779499 tctagtagcttccttattattccatagtattttagagacttctatattattctttagttttctagaaacttc 1779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 11850181 - 11850252
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||| ||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11850181 tctagtagctttcttattattccctagtattttagagacttctatattattctttagtcttctagagacttc 11850252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 37207782 - 37207711
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  37207782 tctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagacttc 37207711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 11849926 - 11849963
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11849926 gacaaaaggaaaggtagagaaaatagagaaacactcta 11849963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 11852184 - 11852221
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11852184 gacaaaaggaaaggtagagaaaatagagaaacactcta 11852221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 21743793 - 21743751
Alignment:
Q  10 ccagagacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    |||| ||||||||||| |||||||||||||||||||| |||||    
T  21743793 ccagggacaaaaggaaaggtagagaaaatagagaaactctcta 21743751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 22600817 - 22600751
Alignment:
Q  54 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||||| ||||||||||  ||  ||| |||||||||| |||||||| |||||| |||||||||||||    
T  22600817 tagctttcttattattccatagtattctagagacttctatattattatttagtcttctagagacttc 22600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 23164263 - 23164300
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  23164263 gacaaaagggaaggtagagaaaatagagaaacactcta 23164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 37207684 - 37207639
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  37207684 cttccatattattcttcatcattctagagacttccatattattctt 37207639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 21268403 - 21268474
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  21268403 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 21268474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 36377456 - 36377527
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36377456 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36377527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 36379741 - 36379812
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36379741 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36379812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4877167 - 4877130
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4877167 gacaaaaggaaaggtagagaaaatagagaaacactcta 4877130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4879495 - 4879458
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4879495 gacaaaaggaaaggtagagaaaatagagaaacactcta 4879458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 24519162 - 24519199
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  24519162 gacaaaaggaaaggtagagaaaatagagaaacactcta 24519199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36379474 - 36379511
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  36379474 gacaaaaggaaaggtagagaaaatagagaaacactcta 36379511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 4876864 - 4876819
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4876864 cttccatattattcttcaccattctagagacttccatattattctt 4876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 4879192 - 4879147
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4879192 cttccatattattcttcaccattctagagacttccatattattctt 4879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 21268129 - 21268166
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    |||||||| || ||||||||||||||||||||||||||    
T  21268129 gacaaaagaaaaggtagagaaaatagagaaacactcta 21268166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 21268501 - 21268546
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  21268501 cttccatattattcttcaccattctagagacttccatattattctt 21268546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 24519466 - 24519511
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  24519466 cttccatattattcttcaccattctagagacttccatattattctt 24519511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 36377193 - 36377226
Alignment:
Q  19 aaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||| ||||||||||||||||||||||||||    
T  36377193 aaaggaaaggtagagaaaatagagaaacactcta 36377226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 8733768 - 8733839
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  8733768 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 8733839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 3932625 - 3932554
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3932625 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3932554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 3934864 - 3934793
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3934864 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3934793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 36464497 - 36464568
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||| ||||||||||||||||||||    
T  36464497 tctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagacttc 36464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 42678852 - 42678923
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||||||||||||| ||||||| |||||    
T  42678852 tctagtagcttccttattattccatagtattttagagacttccatattattctttagttttctagaaacttc 42678923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 8414764 - 8414835
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| ||| |||||||||||||  ||  ||| |||||||||| ||||||||||||||||||||||| |||||    
T  8414764 tctagtagtttccttattattccctagtattctagagacttctatattattctttagtgttctagatacttc 8414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 3932890 - 3932853
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3932890 gacaaaaggaaaggtagagaaaatagagaaacactcta 3932853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 3935129 - 3935092
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3935129 gacaaaaggaaaggtagagaaaatagagaaacactcta 3935092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 18395488 - 18395451
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18395488 gacaaaaggaaaggtagagaaaatagagaaacactcta 18395451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 19786957 - 19786920
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19786957 gacaaaaggaaaggtagagaaaatagagaaacactcta 19786920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 19789263 - 19789226
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19789263 gacaaaaggaaaggtagagaaaatagagaaacactcta 19789226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 3052078 - 3052039
Alignment:
Q  81 tagagacttccatattattctttagtgttctagagacttc 120  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  3052078 tagagacttctatattattctttagtgttatagagacttc 3052039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3932557 - 3932512
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3932557 cttccatattattcttcatcattctagagacttccatattattctt 3932512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3934796 - 3934751
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3934796 cttccatattattcttcatcattctagagacttccatattattctt 3934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8414499 - 8414536
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  8414499 gacaaaaggaaaggtagagaaaatagaaaaacactcta 8414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 8731185 - 8731222
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8731185 gacaaaaggaaaggtagataaaatagagaaacactcta 8731222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 16496962 - 16496999
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16496962 gacaaaagggaaggtagagaaaatagagaaacactcta 16496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 16497156 - 16497213
Alignment:
Q  63 tattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||||||||| | |||| |||||||||||||||||||||| |   |||||||||||||    
T  16497156 tattattcttgatcattctagagacttccatattattcttgatcattctagagacttc 16497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 16497180 - 16497225
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  16497180 cttccatattattcttgatcattctagagacttccatattattctt 16497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 16535144 - 16535181
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16535144 gacaaaagggaaggtagagaaaatagagaaacactcta 16535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 16630518 - 16630481
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  16630518 gacaaaagggaaggtagagaaaatagagaaacactcta 16630481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36464222 - 36464259
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  36464222 gacaaaaggaaaggtagagaaaattgagaaacactcta 36464259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42678580 - 42678617
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  42678580 gacaaaaggaaaggtagagaaaataaagaaacactcta 42678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 18966398 - 18966485
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 136  Q
    |||| ||||| |||||||||| | ||  ||| ||||||||||| ||||||||||| ||||||||||||||||  |||| |||||||||    
T  18966398 tctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagt 18966485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4531011 - 4530974
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4531011 gacaaaaggaaaggtagagaaaatagagaaacactcta 4530974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 4533308 - 4533271
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4533308 gacaaaaggaaaggtagagaaaatagagaaacactcta 4533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 31527 - 31475
Alignment:
Q  84 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 136  Q
    ||||||||||||||||||| |||||||||||||||||  |||| |||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagt 31475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  84 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 136  Q
    ||||||||||||||||||| | |||||||||||||||  |||| |||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagt 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 29206 - 29143
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    ||||| |||||||||| ||  || |||||||||||| ||| |||||||||||| ||||||||||    
T  29206 cttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttc 29143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 29505 - 29468
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  29505 gacaaaaggaaaggtagagaaaatagagaaactctcta 29468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 31820 - 31783
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  31820 gacaaaaggaaaggtagagaaaatagagaaactctcta 31783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 45166981 - 45166910
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45166981 tctagtagcttccttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45166910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 13774327 - 13774290
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13774327 gacaaaaggaaaggtagagaaaatagagaaacactcta 13774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 13776624 - 13776587
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13776624 gacaaaaggaaaggtagagaaaatagagaaacactcta 13776587  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42468448 - 42468485
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42468448 gacaaaaggaaaggtagagaaaatagagaaacactcta 42468485  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42470777 - 42470814
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42470777 gacaaaaggaaaggtagagaaaatagagaaacactcta 42470814  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 45162355 - 45162318
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  45162355 gacaaaaggaaaggtagagaaaatagagaaacactcta 45162318  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 50855780 - 50855817
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  50855780 gacaaaaggaaaggtagagaaaatagagaaacactcta 50855817  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 45162089 - 45162018
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 120  Q
    |||| |||||| ||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45162089 tctagtagctttcttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45162018  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 19429085 - 19429122
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  19429085 gacaaaaggaaaggtagagaaaatagagaaactctcta 19429122  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 42468751 - 42468796
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42468751 cttccatattattcttcaccattctagagacttccatattattctt 42468796  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 42471080 - 42471125
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42471080 cttccatattattcttcaccattctagagacttccatattattctt 42471125  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 45162021 - 45161976
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45162021 cttccatattattcttcaccattctagagacttccatattattctt 45161976  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 45166913 - 45166868
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45166913 cttccatattattcttcaccattctagagacttccatattattctt 45166868  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 50856035 - 50856088
Alignment:
Q  49 tctattagcttccttattattctttaacattatagagacttccatattattctt 102  Q
    |||| |||||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  50856035 tctagtagcttccttattattccatagtattctagagacttccatattattctt 50856088  T

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Target: scaffold0599 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1792 - 1755
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1792 gacaaaaggaaaggtagagaaaatagagaaacactcta 1755  T

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Target: scaffold1361 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 131 - 97
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacact 49  Q
    ||||||||||| |||||||||||||||||||||||    
T  131 gacaaaaggaaaggtagagaaaatagagaaacact 97  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 73119 - 73074
Alignment:
Q  57 cttccttattattctttaacattatagagacttccatattattctt 102  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  73119 cttccatattattcttcaccattctagagacttccatattattctt 73074  T

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Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 73153 - 73116
Alignment:
Q  83 gagacttccatattattctttagtgttctagagacttc 120  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttc 73116  T

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Target: scaffold0008; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 88522 - 88485
Alignment:
Q  15 gacaaaaggaatggtagagaaaatagagaaacactcta 52  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  88522 gacaaaaggaaaggtagagaaaatagagaaagactcta 88485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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