View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_26 (Length: 333)
Name: NF18415_low_26
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 29064026 - 29063722
Alignment:
| Q |
14 |
aagaatatgacagagagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29064026 |
aagaatatgacagagagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
29063927 |
T |
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| Q |
113 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtc-tcnnnnnnnctttctacttttacagggaattttctacactcactca--cacta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29063926 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcacta |
29063827 |
T |
|
| Q |
210 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063826 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
29063727 |
T |
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| Q |
310 |
tgttg |
314 |
Q |
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||||| |
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| T |
29063726 |
tgttg |
29063722 |
T |
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