View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_27 (Length: 315)
Name: NF18415_low_27
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 43366671 - 43366909
Alignment:
| Q |
33 |
aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaa |
132 |
Q |
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| T |
43366671 |
aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaa |
43366770 |
T |
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| Q |
133 |
gttacacacagcagcagaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgat |
232 |
Q |
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| T |
43366771 |
gttacacacagcagcaaaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgat |
43366870 |
T |
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| Q |
233 |
gaaaagaaggagaaggcagacggagatggcggaaatgag |
271 |
Q |
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|||||||| |||||||||||||||||||| ||||||||| |
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| T |
43366871 |
gaaaagaaagagaaggcagacggagatggaggaaatgag |
43366909 |
T |
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