View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_low_28 (Length: 314)

Name: NF18415_low_28
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_low_28
NF18415_low_28
[»] chr6 (24 HSPs)
chr6 (25-304)||(5433697-5433976)
chr6 (87-304)||(5128557-5128774)
chr6 (94-288)||(5284545-5284739)
chr6 (85-301)||(5278288-5278504)
chr6 (111-302)||(5447335-5447526)
chr6 (87-301)||(5690302-5690516)
chr6 (85-301)||(5176461-5176677)
chr6 (107-298)||(5074054-5074245)
chr6 (87-296)||(5354762-5354971)
chr6 (94-305)||(5257473-5257684)
chr6 (99-304)||(5344597-5344802)
chr6 (101-292)||(5147048-5147239)
chr6 (111-292)||(5096456-5096637)
chr6 (111-304)||(5446905-5447098)
chr6 (111-292)||(5102766-5102947)
chr6 (111-292)||(5157780-5157961)
chr6 (115-292)||(5425662-5425839)
chr6 (111-301)||(5182070-5182260)
chr6 (94-289)||(5383057-5383252)
chr6 (94-225)||(5396681-5396812)
chr6 (111-225)||(5066913-5067027)
chr6 (115-292)||(5350148-5350323)
chr6 (111-253)||(5370319-5370461)
chr6 (116-292)||(5244019-5244195)
[»] chr4 (21 HSPs)
chr4 (94-301)||(4360808-4361015)
chr4 (111-301)||(4344394-4344584)
chr4 (111-301)||(4335093-4335283)
chr4 (87-292)||(4124091-4124296)
chr4 (86-301)||(4320762-4320977)
chr4 (129-227)||(6772870-6772968)
chr4 (111-289)||(4133578-4133756)
chr4 (129-227)||(6498743-6498841)
chr4 (129-227)||(6752726-6752824)
chr4 (129-227)||(6815236-6815334)
chr4 (166-226)||(6650870-6650930)
chr4 (129-227)||(6675469-6675567)
chr4 (129-227)||(6837040-6837138)
chr4 (122-292)||(7885543-7885713)
chr4 (131-227)||(6532449-6532545)
chr4 (129-227)||(6621724-6621822)
chr4 (129-227)||(6728172-6728270)
chr4 (129-227)||(6796553-6796651)
chr4 (166-227)||(6545665-6545726)
chr4 (127-227)||(6758488-6758588)
chr4 (129-227)||(6588413-6588511)
[»] chr3 (4 HSPs)
chr3 (102-304)||(47986992-47987194)
chr3 (102-304)||(47996279-47996481)
chr3 (102-304)||(48005566-48005768)
chr3 (102-304)||(48014851-48015053)
[»] chr5 (1 HSPs)
chr5 (99-223)||(8877345-8877469)
[»] chr7 (3 HSPs)
chr7 (111-301)||(36213972-36214162)
chr7 (133-227)||(18935156-18935250)
chr7 (127-225)||(34724805-34724903)
[»] scaffold0294 (1 HSPs)
scaffold0294 (94-225)||(9119-9250)
[»] scaffold0552 (1 HSPs)
scaffold0552 (129-227)||(8502-8600)
[»] scaffold0813 (1 HSPs)
scaffold0813 (166-226)||(5044-5104)
[»] scaffold0286 (1 HSPs)
scaffold0286 (166-226)||(6462-6522)
[»] scaffold0373 (1 HSPs)
scaffold0373 (129-227)||(9456-9554)
[»] chr2 (1 HSPs)
chr2 (121-222)||(22584436-22584537)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 5433697 - 5433976
Alignment:
Q  25 tttaaggttagtgatacatagtagttgcattcgttttttattgaaatcttcttccctatatcttctctttaatgtttatgttgtttcagaggatggagaa 124  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||  ||| |||||||| |||||||||| || ||| |||| || ||||| ||||||||    
T  5433697 tttaaggttagtgatacatagtagttgctttcgtttattatttaatgcttattccctatgtcttctcttttatttttgtgttcttgcagagaatggagaa 5433796  T
Q  125 gttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtcca 224  Q
    | ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  5433797 gctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaagttagtactcacagattgtcca 5433896  T
Q  225 agtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcctatg 304  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||| | ||||||||||||||||||| |||||||||||    
T  5433897 agtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaagattgtattggcctatg 5433976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 304
Target Start/End: Complemental strand, 5128774 - 5128557
Alignment:
Q  87 ttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaact 186  Q
    ||||||| ||| || ||||| || |||| |||||||||| |||||||||| |||| |||||| | ||||| ||||||||| ||||| ||||||||| | |    
T  5128774 ttctcttcaattttcatgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatt 5128675  T
Q  187 tgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttgga 286  Q
    | ||||||||||||||||||||||||||||||||| |||   | |||||| ||||| ||||||| ||||||||||||||||||| | |||||||||||||    
T  5128674 tacctaatcttgaaaagctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttgga 5128575  T
Q  287 agattgcattggcctatg 304  Q
    |||||||||| |||||||    
T  5128574 agattgcattagcctatg 5128557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 94 - 288
Target Start/End: Complemental strand, 5284739 - 5284545
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||||| || ||||||||||||||| |||||||||| ||||||||||| |  |||||||| |||| || |||||||||||| ||| |||||||    
T  5284739 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaa 5284640  T
Q  194 tcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaag 288  Q
    ||||||||||||||| ||||||||||||||||| || |||||| ||||  ||||||||||| ||||||||||||||  | |||||||||| ||||    
T  5284639 tcttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaattgctttgataaattttgaag 5284545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 301
Target Start/End: Original strand, 5278288 - 5278504
Alignment:
Q  85 tcttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaa 184  Q
    |||||| |||||| ||| |||| || ||||||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||| |||||||||||    
T  5278288 tcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaa 5278387  T
Q  185 cttgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttg 284  Q
    | |||||||||||||||||||  |||||| |||||| |||||  | | |||| |||||  |||||||||| ||||| ||||||||| | ||||||| |||    
T  5278388 catgcctaatcttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttg 5278487  T
Q  285 gaagattgcattggcct 301  Q
    |||||||| ||| ||||    
T  5278488 gaagattgtattagcct 5278504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 111 - 302
Target Start/End: Original strand, 5447335 - 5447526
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    ||||||||||| ||  |||||| ||| ||||||||||| | ||||  ||||||| | | ||| |||||||||  ||||||||||||||||||||||||||    
T  5447335 cagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatcttgaaaagctagtac 5447434  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggccta 302  Q
    |||||||||||||||   | |||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  5447435 tcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttggaagattgtattggccta 5447526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 301
Target Start/End: Complemental strand, 5690516 - 5690302
Alignment:
Q  87 ttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaact 186  Q
    ||||||||||| ||||| || ||  ||| |||||||||| | |||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||| |     
T  5690516 ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatca 5690417  T
Q  187 tgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttgga 286  Q
    |||||||||||||||||||| |||||||||||||||||||  |   |||| ||||   |||||||||||||||| | ||||||| | |||||||||||||    
T  5690416 tgcctaatcttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttgga 5690317  T
Q  287 agattgcattggcct 301  Q
    |||||| ||| ||||    
T  5690316 agattgtattagcct 5690302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 301
Target Start/End: Original strand, 5176461 - 5176677
Alignment:
Q  85 tcttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaa 184  Q
    |||||| |||||| ||| |||| || ||||||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||| |||||||||||    
T  5176461 tcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaa 5176560  T
Q  185 cttgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttg 284  Q
    | |||||||||||||||||||  |||||| |||||| |||||  |   |||| ||||   |||||||||||||||| ||||||||| | ||||||| |||    
T  5176561 catgcctaatcttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttg 5176660  T
Q  285 gaagattgcattggcct 301  Q
    |||||||| ||| ||||    
T  5176661 gaagattgtattagcct 5176677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 298
Target Start/End: Complemental strand, 5074245 - 5074054
Alignment:
Q  107 gtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagcta 206  Q
    |||||||||| |||||||| ||||||| || ||||||||||| | |||||||||||| ||||| || || |||||||||||||||||||||||| | |||    
T  5074245 gtttcagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaacta 5074146  T
Q  207 gtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattgg 298  Q
    ||||||| ||||||||||||  | || ||| |||||  ||| |||| ||||||||||||||||| | ||||||||||||||||||| |||||    
T  5074145 gtactcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgtattgg 5074054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 296
Target Start/End: Complemental strand, 5354971 - 5354762
Alignment:
Q  87 ttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaact 186  Q
    ||||||||||| | |||||| || ||||| |||||| |  |||||||||| ||||||||||| |  |||| ||||||||| ||||||||||||||  ||     
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttaca 5354872  T
Q  187 tgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttgga 286  Q
    ||||||||||||||||||| |||||||||||||||||||   | |||||  ||||| | ||||||||||||||||||||||||| | ||||||||||  |    
T  5354871 tgcctaatcttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaatttcaa 5354772  T
Q  287 agattgcatt 296  Q
    ||| ||||||    
T  5354771 agactgcatt 5354762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 5257684 - 5257473
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||||| || ||||||||||||||| |||||||||| ||||||||||| |  | || ||| |||  || |||||||||||| ||| |||||||    
T  5257684 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaa 5257585  T
Q  194 tcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgc 293  Q
    |||||||||| |||||||||||||||||||||  || |||  | ||||||| ||||||||| ||||||| ||||||  | |||||||||||||||||||     
T  5257584 tcttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaattgttttgataaatttggaagattgt 5257485  T
Q  294 attggcctatgc 305  Q
    ||| || |||||    
T  5257484 attagcttatgc 5257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 5344597 - 5344802
Alignment:
Q  99 tttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttg 198  Q
    |||||||| || |||| |||||||||| |||||||||| ||||||||||| | |||||| |||| ||||||||| ||||||||  |||| ||||||||||    
T  5344597 tttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatcttg 5344696  T
Q  199 aaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattgg 298  Q
    ||||| ||||||||   |||||||||||| | | ||||||||||  |||||||||| ||||||| ||||||| | | || ||||||||||| || ||| |    
T  5344697 aaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattcttctcattaatttggaagactgtattag 5344796  T
Q  299 cctatg 304  Q
    ||||||    
T  5344797 cctatg 5344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 5147239 - 5147048
Alignment:
Q  101 tatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaa 200  Q
    |||||| || ||||||||||||||| | |||||||| || |||||||||| ||||||| ||||||| |||||  |||||| |||||||||||||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaa 5147140  T
Q  201 aagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
     | |||||||||   ||||||||||   | |||||  |||||  ||| |||||| ||||||||||||||| | |||||||||||||||||||    
T  5147139 caactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttggaagattg 5147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 292
Target Start/End: Original strand, 5096456 - 5096637
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    ||||||||||| ||  |||||||||| ||||||||||| | ||||| ||||||||| ||||| ||||||||| || ||||||||||||| ||||| ||||    
T  5096456 cagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaagctggtac 5096555  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    | |||||||||||||   | |||||| ||||| ||||||||||| |||||| | |||||| | | ||| |||||||||||||    
T  5096556 ttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattg 5096637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 304
Target Start/End: Original strand, 5446905 - 5447098
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    ||||||||||||||| | |||||||| |||||||| || |  || ||||| ||||||| ||||||||||||||||  |||||||||| |||| |||||||    
T  5446905 cagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaaactagtac 5447004  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcctatg 304  Q
    |||||||||| |||    | |||||| ||||  |||||||  |||||||||||||||||| | ||||||| |||||||| |||||| |||||||    
T  5447005 tcaaagattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaattcttctgataaacttggaagactgcattagcctatg 5447098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 292
Target Start/End: Complemental strand, 5102947 - 5102766
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||| |||| ||| |||||||||| ||||||||||| | ||||| |||||| || ||||||||||||||| |||||||||||||||| ||||| ||||    
T  5102947 cagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaagctggtac 5102848  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    |||||||||||||||   | |||||| ||| | ||| ||||||| |||||| | |||| | | | ||| |||||||||||||    
T  5102847 tcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttctaatagatttggaagattg 5102766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 292
Target Start/End: Complemental strand, 5157961 - 5157780
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||| |||||| ||| | |||||||| ||||||||||| | ||||| |||||| || ||||| ||||||||| || ||||||||||||| ||||| ||||    
T  5157961 cagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtac 5157862  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    |||||||||||||||   | |||||| ||||| ||||||||||| |||||| | |||||| | | ||| |||||||||||||    
T  5157861 tcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattg 5157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 5425662 - 5425839
Alignment:
Q  115 ggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaa 214  Q
    ||||||| ||| |||||||||| ||||||||||| | ||||| |||||| |  |||||||||||| ||  | ||||||||||||||||||| || |||||    
T  5425662 ggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaagctggtgctcaa 5425761  T
Q  215 agattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    |||||||||||   | |||||||||||| ||||||||||| ||||||   |||||| | | |||||||| ||||||||    
T  5425762 agattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattg 5425839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 111 - 301
Target Start/End: Complemental strand, 5182260 - 5182070
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||| |||||||| |||||||||| ||||||||||| | ||||| |||| || | || || |||||||||||||||||||| |||||| || ||||||    
T  5182260 cagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaaccttgaacagttagtac 5182161  T
Q  211 tcaaagattgtcc-aagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||| ||||||||| |||| | |||||  ||||    || |||||| ||||||||||||| | | ||||||||||||||||||||||| ||||    
T  5182160 tcacagattgtccgaagt-tgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatttggaagattgcattagcct 5182070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 5383057 - 5383252
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||||| || |||||||||||||   ||||||| || || |||||||| | |||||| |||   || ||||| ||||| ||||| ||||||||    
T  5383057 taatatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa 5383156  T
Q  194 tcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaaga 289  Q
    |||||||||||||||||||  ||||||||| ||  | || ||| ||||| ||||||||||| ||||||| ||||||| | |||| |||||||||||    
T  5383157 tcttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga 5383252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 5396681 - 5396812
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||||| || |||||| |||||||| |||||||||| ||||||||||| | ||||||| ||||||| ||||| |||||||||||| |||||||    
T  5396681 taatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaa 5396780  T
Q  194 tcttgaaaagctagtactcaaagattgtccaa 225  Q
    ||||||| | |||||| |||  ||||||||||    
T  5396781 tcttgaacaactagtagtcactgattgtccaa 5396812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 5067027 - 5066913
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    ||||||||||| ||| |||||||||| |||||||| || | ||||| |||||  || ||||||||||||||| |  ||||||||||||||||||||||||    
T  5067027 cagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaagctagtac 5066928  T
Q  211 tcaaagattgtccaa 225  Q
    |||||||||||||||    
T  5066927 tcaaagattgtccaa 5066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 5350148 - 5350323
Alignment:
Q  115 ggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaa 214  Q
    ||||||| ||| |||||||||| ||||||||||| | |  || ||||||||| ||||  ||||||||| || ||||||||||||||||||||||||||||    
T  5350148 ggatggaaaagctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactcaa 5350245  T
Q  215 agattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    |||||||||||   | || ||| ||||| ||||||||||| |||||| | |||||| | | ||| ||||||| |||||    
T  5350246 agattgtccaatgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttggaggattg 5350323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 5370319 - 5370461
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||| |||||| ||| | |||||||| ||||||||||| | ||||| |||||| || ||||| ||||||||| |||||||||| ||||||||| ||||||    
T  5370319 cagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagttagtac 5370418  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattgg 253  Q
    ||||||||||| |||  || |||||| ||||| ||||||||||    
T  5370419 tcaaagattgttcaatgctgtctgaggtttctcctagcattgg 5370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 5244195 - 5244019
Alignment:
Q  116 gatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaa 215  Q
    |||||| ||| | |||||||| ||||||||||| | ||||| |||||| || ||||| ||||||||| || || | ||||||||||||||||||||||||    
T  5244195 gatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaagctagtactcaaa 5244096  T
Q  216 gattgtccaagtctt-tctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    |||||| | ||| || || ||||||||| ||||||||||  |||||| | |||||| | | ||| |||||||||||||    
T  5244095 gattgttc-agtgttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattg 5244019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 94 - 301
Target Start/End: Original strand, 4360808 - 4361015
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||||| |||||| |||||||| || |||||||||| ||||||||||| | ||| ||||||||||| || |||||||||||| ||||||||||    
T  4360808 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 4360907  T
Q  194 tcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgc 293  Q
    |||||||||||||||||| |||||||||||||| || |||||||||||    || |||||||||||||| ||||||| | ||||||||||| ||||||||    
T  4360908 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattgc 4361007  T
Q  294 attggcct 301  Q
    ||| ||||    
T  4361008 attagcct 4361015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 4344394 - 4344584
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||||||||  || |||||||||| ||||| ||||| | ||||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||    
T  4344394 cagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtac 4344493  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    |||||||||||||||| || |||||||||||    || |||||||||||||| ||||||| | ||||||||||| || |||| ||| ||||    
T  4344494 tcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatttgaaaaattgtattagcct 4344584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 4335093 - 4335283
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||||||||| ||||||||||||| ||||||||||| | ||||||||| ||||| |||||||| |||||| ||||||||||||||||||| |||||||    
T  4335093 cagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacctagtac 4335192  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||||||||||||| || || |||||| | ||   ||  ||||||||||| || ||| ||| | ||||||||||| ||||||||||| ||||    
T  4335193 tcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagattgcattagcct 4335283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 4124296 - 4124091
Alignment:
Q  87 ttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaact 186  Q
    |||||| |||| ||| |||| || ||||| |||||| || |||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||| |||    
T  4124296 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatact 4124197  T
Q  187 tgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttgga 286  Q
    ||||||| ||||||||||| |||||||||||||||||||| || |||||| | ||   ||  ||||||||||| || ||| ||| | ||||||||||| |    
T  4124196 tgcctaaccttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaa 4124097  T
Q  287 agattg 292  Q
    ||||||    
T  4124096 agattg 4124091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 301
Target Start/End: Complemental strand, 4320977 - 4320762
Alignment:
Q  86 cttctctttaatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaac 185  Q
    ||||||| |||| ||| | || || |||||||||||| || |||| ||||| ||||||||||| | |||| || ||||||| ||||||||||||||| ||    
T  4320977 cttctctataatatttttatttttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatac 4320878  T
Q  186 ttgcctaatcttgaaaagctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttgg 285  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| || ||| || ||||   |||||||||||||||||| ||| ||  | |||||||||||     
T  4320877 ttgcctaatcttgaaaagctagtgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatttga 4320778  T
Q  286 aagattgcattggcct 301  Q
    ||||||| ||| ||||    
T  4320777 aagattgtattagcct 4320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6772870 - 6772968
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| |  ||| || ||||  ||||||| ||||||||| ||||||| |||||||||||||||||||||||  |||||||||||    
T  6772870 aaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctagtactcaagaattgtccaagt 6772968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 4133756 - 4133578
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||| |||||||  | ||| |||| ||||||||||| | ||||| |||   ||| ||||| || |||||| || |||||||||| ||||| ||| |||    
T  4133756 cagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatctagaaaaactaatac 4133657  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaaga 289  Q
    |||||||||||||||| || |||||| ||||   || |||||| |||||| ||||| |||  || ||||||||| ||||    
T  4133656 tcaaagattgtccaaggctgtctgaggtttcccataccattggtcatctccataaagttctcattataaatttgaaaga 4133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 6498841 - 6498743
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |||  || |||   ||||||| |||||| |  ||||||||||| |||||||||||||||||||||| |||||||||    
T  6498841 aaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagctagtactcaaagactgtccaagt 6498743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6752726 - 6752824
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |||  || ||||  |||| || ||||||||| |  ||||||||||||||||||| ||||||||||| |||||||||    
T  6752726 aaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaatcttgaaaagcttgtactcaaagactgtccaagt 6752824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6815236 - 6815334
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||| ||||| | ||   || ||||  ||||||| |||||| || ||||||| |||||||||||||||||||||||| |||||||||||    
T  6815236 aaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaagt 6815334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 6650870 - 6650930
Alignment:
Q  166 aaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaag 226  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||||||| ||||||||    
T  6650870 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6650930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6675469 - 6675567
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |||  || || |  ||||||| ||||||||| ||||||| ||| |||||||||| || |||||||| |||||||||    
T  6675469 aaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagactgtccaagt 6675567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6837040 - 6837138
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |||  || ||||  |||| || ||||| ||| |  |||| |||||||||||||||||||||||||| |||||||||    
T  6837040 aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagt 6837138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 292
Target Start/End: Complemental strand, 7885713 - 7885543
Alignment:
Q  122 gaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgt 221  Q
    |||| |||||||||||||| | ||||| | |||  |  ||| ||| ||||| ||||||||||| ||||| |||||||||||| || |||| || ||||||    
T  7885713 gaagctgaaaattcttaatttgagtcattctcacaacttgagacatacccccgacttttcaaaattgccaaatcttgaaaagttaatacttaaggattgt 7885614  T
Q  222 ccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattg 292  Q
    || ||| | |||  | |||||||||  || ||||||||||| || |||| | | ||||||||| |||||||    
T  7885613 cccagtttgtcttcggtttcttctaatataggacatctcaaaaagattcttttaataaatttgaaagattg 7885543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 6532545 - 6532449
Alignment:
Q  131 aattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||| | ||   || ||||  |||||||  |||||||| |  ||||||||||||||||| ||||||||||||| |||||||||    
T  6532545 aattcttaatcttagtcattctctacatttgactgaaaccccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagt 6532449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 6621822 - 6621724
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |    || ||||  ||||||| || |||||| || |||||||||| ||||||||||| |||||||| |||||||||    
T  6621822 aaaattcttaatcttagtcattctttggatttgactgaaaccccagatttttcatacatgcctaatctcgaaaagctagtgctcaaagactgtccaagt 6621724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6728172 - 6728270
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | ||   || ||||  ||||||| ||||||||  |||| ||||||||||||||||| || |||||| | |||||||||    
T  6728172 aaaattcttaatcttagtcattctctggatttgactgaaaccccagacttttcctacttacctaatcttgaaaagctcgtgctcaaaaactgtccaagt 6728270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6796553 - 6796651
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| |  |   || ||||  ||||||| |||||| || |||| || |||||||||||||||||||| ||| |||||||||||    
T  6796553 aaaattcttaatcttagtcattccctggatttgactgaaaccccagactttacatacttaccaaatcttgaaaagctagtactaaaaaattgtccaagt 6796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 6545726 - 6545665
Alignment:
Q  166 aaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    ||||||| ||||||||| |  ||||||||||||||||| ||||||||||||  |||||||||    
T  6545726 aaaccccagacttttcatatatgcctaatcttgaaaagatagtactcaaaggctgtccaagt 6545665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 6758488 - 6758588
Alignment:
Q  127 tgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaag 226  Q
    |||||||||||||||||||||| | ||   || ||||  ||| ||| ||||||||  |||| ||||||||||||||||| || |||||| | ||||||||    
T  6758488 tgaaaattcttaatcttagtcattctctggatttgactaaaagcccagacttttcctactttcctaatcttgaaaagctggtgctcaaaaactgtccaag 6758587  T
Q  227 t 227  Q
    |    
T  6758588 t 6758588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 6588511 - 6588413
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | ||   || ||||  ||||||| ||||||||  |||| ||||||||||||||||| || || ||| | |||||||||    
T  6588511 aaaattcttaatcttagtcattctctagatttgactgaaaccccagacttttcctacttacctaatcttgaaaagcttgtgctaaaaaactgtccaagt 6588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 47987194 - 47986992
Alignment:
Q  102 atgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaa 201  Q
    ||||| || |||| |||||| ||| | |||||||| ||||||||||| | ||||||||| |||| || || ||||||||||||| |||||||||| ||||    
T  47987194 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47987095  T
Q  202 agctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||||||||||||||||||| ||||   | |||||||||||| ||||||||||||||||| | ||||||| | |||||||||||||||| || ||| ||||    
T  47987094 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47986995  T
Q  302 atg 304  Q
    |||    
T  47986994 atg 47986992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 47996481 - 47996279
Alignment:
Q  102 atgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaa 201  Q
    ||||| || |||| |||||| ||| | |||||||| ||||||||||| | ||||||||| |||| || || ||||||||||||| |||||||||| ||||    
T  47996481 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47996382  T
Q  202 agctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||||||||||||||||||| ||||   | |||||||||||| ||||||||||||||||| | ||||||| | |||||||||||||||| || ||| ||||    
T  47996381 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47996282  T
Q  302 atg 304  Q
    |||    
T  47996281 atg 47996279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 48005768 - 48005566
Alignment:
Q  102 atgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaa 201  Q
    ||||| || |||| |||||| ||| | |||||||| ||||||||||| | ||||||||| |||| || || ||||||||||||| |||||||||| ||||    
T  48005768 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48005669  T
Q  202 agctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||||||||||||||||||| ||||   | |||||||||||| ||||||||||||||||| | ||||||| | |||||||||||||||| || ||| ||||    
T  48005668 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48005569  T
Q  302 atg 304  Q
    |||    
T  48005568 atg 48005566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 48015053 - 48014851
Alignment:
Q  102 atgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaa 201  Q
    ||||| || |||| |||||| ||| | |||||||| ||||||||||| | ||||||||| |||| || || ||||||||||||| |||||||||| ||||    
T  48015053 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48014954  T
Q  202 agctagtactcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||||||||||||||||||| ||||   | |||||||||||| ||||||||||||||||| | ||||||| | |||||||||||||||| || ||| ||||    
T  48014953 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48014854  T
Q  302 atg 304  Q
    |||    
T  48014853 atg 48014851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 8877345 - 8877469
Alignment:
Q  99 tttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttg 198  Q
    |||||||| || ||||||||||||||| | |||||||| |||||||| |||| |||| ||||||||||||| || ||||||| |||||||||||||||||    
T  8877345 tttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatcttg 8877444  T
Q  199 aaaagctagtactcaaagattgtcc 223  Q
    |||||||||||||||||||||||||    
T  8877445 aaaagctagtactcaaagattgtcc 8877469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 301
Target Start/End: Complemental strand, 36214162 - 36213972
Alignment:
Q  111 cagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtac 210  Q
    |||||| |||| ||| |||||||||| ||||||||||| | ||||||||||||| | || || || ||||||||| ||||||| |||||||| |||||||    
T  36214162 cagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaaccttgaaaaactagtac 36214063  T
Q  211 tcaaagattgtccaagtctttctgagatttcttctagcattggacatctcaataaaattcatatgataaatttggaagattgcattggcct 301  Q
    ||| ||||||||||||  | |||||| ||||    || |||||||||||||||||| ||| | | ||||||||||||||||| ||| ||||    
T  36214062 tcacagattgtccaagattgtctgaggtttcccacagtattggacatctcaataaagttcttctaataaatttggaagattgtattagcct 36213972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 18935156 - 18935250
Alignment:
Q  133 ttcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||| | |||| | |||| |||||||||  |||||||||||||||| |||||||||||| || ||||||||||||| ||||||    
T  18935156 ttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagt 18935250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 34724903 - 34724805
Alignment:
Q  127 tgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaa 225  Q
    ||||| |||||||||||||||| | |||| |  ||| |||||| || ||||||||| ||||||| |||||||||||| || ||||||||||||||||||    
T  34724903 tgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaa 34724805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 9250 - 9119
Alignment:
Q  94 taatgtttatgttgtttcagaggatggagaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaa 193  Q
    |||| |||||| | || |||||| ||| |||| |||||||||| ||||||||||| | ||||||| |||  || ||||| ||||||||| | ||||||||    
T  9250 taatatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaa 9151  T
Q  194 tcttgaaaagctagtactcaaagattgtccaa 225  Q
    ||||||||||||||||||||||||||||||||    
T  9150 tcttgaaaagctagtactcaaagattgtccaa 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 8600 - 8502
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||| ||||| | ||   || ||||  ||||||| |||||| || ||||||| |||||||||||||||||||||||| |||||||||||    
T  8600 aaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaagt 8502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5104 - 5044
Alignment:
Q  166 aaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaag 226  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||||||| ||||||||    
T  5104 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 6462 - 6522
Alignment:
Q  166 aaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaag 226  Q
    ||||||| |||||||||  | ||||||||||||||||||||||||||||||| ||||||||    
T  6462 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 9456 - 9554
Alignment:
Q  129 aaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattgtccaagt 227  Q
    |||||||||||||||||||| | |||  || ||||  |||| || ||||| ||| |  |||| |||||||||||||||||||||||||| |||||||||    
T  9456 aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagt 9554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 22584537 - 22584436
Alignment:
Q  121 agaagttgaaaattcttaatcttagtcactgtcattatctgacacaaacccctgacttttcaaacttgcctaatcttgaaaagctagtactcaaagattg 220  Q
    ||||||||||| |||| ||||||||||| | |||  |||| ||| ||| || ||||||||  |   ||||||||||||||||| ||||||||||||||||    
T  22584537 agaagttgaaagttctcaatcttagtcattctcacaatctcacagaaagccttgacttttttatgctgcctaatcttgaaaagatagtactcaaagattg 22584438  T
Q  221 tc 222  Q
    ||    
T  22584437 tc 22584436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University