View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18415_low_3 (Length: 548)
Name: NF18415_low_3
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 25988509 - 25989054
Alignment:
| Q |
1 |
aagcttgatcaaaggtgatgatgcttaacctcattgtattttattgctttctcattgctttgatgaatgctttattggggnnnnnnnnnnnncaatgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25988509 |
aagcttgatcaaaggtgatgatgcttaacctcattgtattttattgctttctcattgctttgatgaatgctttattggggtttttgttttttcaatgttg |
25988608 |
T |
|
| Q |
101 |
taatgtttaaaccnnnnnnnctgtggtaaagatccaagctttggaagtaactatgatgtttttggaaatggggtttcttcttcaannnnnnn-ccttata |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25988609 |
taatgtttaaacctttttttctgtggtaaagatccaagctttgaaagtaactatgatgtttttggaaatggggtttcttcttccattttttttccttata |
25988708 |
T |
|
| Q |
200 |
tggtaaaccccagaaagnnnnnnnnnngttttgttttgtcacaagtgagcannnnnnnnngt--gtgattacacttggaatcagatttctatgcattgct |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25988709 |
tggtaaaccccagaaagaaaaaaaat-gttttgttttgtcacaagtgagcatttttttttttttgtgatcacacttggaatcagatttctatgcattgct |
25988807 |
T |
|
| Q |
298 |
aggatgctgaatgcatagttttttatatgatacatatagagttatatgatatcttttggtatggatcacttgaaaaatgatagggaaagatgtttcctag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25988808 |
aggatgctgaatgcatagttttttatatgatacatatagagttatatgatgtcttttggtatggatcacttaaaaaatgatagggaaagatgtttcctag |
25988907 |
T |
|
| Q |
398 |
tcataaatttgaatagatgtttgtaacctatgtagtatcgacacttcagatcgaag---tatctgggttttgacattcatcggagttgcattcaatcttt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25988908 |
tcataaatttgaatagatgtttgtaacctatgtagtatcgacacttcagatcgaagacatatctgggttttgacattcatcggagttacattcaatcttt |
25989007 |
T |
|
| Q |
495 |
ttactttctcggattattattggcgatgttcggtgtttgtgtctgtg |
541 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25989008 |
ttactttctcggattattattggtgatgttcggtgtttgtgtctgtg |
25989054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University