View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_34 (Length: 283)
Name: NF18415_low_34
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 37041638 - 37041379
Alignment:
| Q |
8 |
gatcacagatgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041638 |
gatcacagatgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtg |
37041539 |
T |
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| Q |
108 |
atggaaaacagataaatttttggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggaccaattgttacctaagaa |
207 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37041538 |
atggaaaatagataaatttctggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggtccaattgttacctaagaa |
37041439 |
T |
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| Q |
208 |
attggatagctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
267 |
Q |
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| T |
37041438 |
attggatagctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
37041379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 34243841 - 34243582
Alignment:
| Q |
8 |
gatcacagatgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtg |
107 |
Q |
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| T |
34243841 |
gatcacagatgcatgaatcatcacatttcctcatccatctggagtggtgttaaggctgagtttcatgttatcaaggataattgttcttggattgtaggag |
34243742 |
T |
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| Q |
108 |
atggaaaacagataaatttttggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggaccaattgttacctaagaa |
207 |
Q |
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| T |
34243741 |
atggaaaacagataaatttctggtcagattcctggtgtggacaggtgcttgctcaaacttaaaatctgcctgatcatttggtcaagcttttaccaaagaa |
34243642 |
T |
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| Q |
208 |
attggatagctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
267 |
Q |
| |
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||| ||||| || ||||||||||| ||||||| || ||||| || | ||||||||||| |
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| T |
34243641 |
attagatagatatattactaatcattcttggaacatctcagatgagctaaatcaatactt |
34243582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 13143004 - 13142753
Alignment:
| Q |
16 |
atgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtgatggaaaa |
115 |
Q |
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|||||| | ||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||| | | || | |||||||| |||||| |||| ||| |
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| T |
13143004 |
atgcattaatcatcacatcttctcatctatatggagtggagttaaaggtgaatttcaagttatcatgaacaacagctcttggatagttggtaatgggaaa |
13142905 |
T |
|
| Q |
116 |
cagataaatttttggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggaccaattgttacctaagaaattggata |
215 |
Q |
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|| ||||||||||||||||||||||||| | ||||||| ||||| |||||||||||| ||||| ||||| || || ||||||||||||| ||||| | |
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| T |
13142904 |
caaataaatttttggtcagactcttggtctggacaggttcttcctcaaacttacaacgtgcattatcatatgcttcagctgttacctaagaagttggaga |
13142805 |
T |
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| Q |
216 |
gctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
267 |
Q |
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||| || | ||||||| |||||| || |||||||| ||||||||| |||| |
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| T |
13142804 |
actatatcaacaatcacaattggaacatttcagaagaattgaatcaaaactt |
13142753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 13140222 - 13139971
Alignment:
| Q |
16 |
atgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtgatggaaaa |
115 |
Q |
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|||||| | ||| ||||||| ||||||||| |||||||||||||| | ||||||||| ||||||| | | || || |||||||| |||||| |||| ||| |
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| T |
13140222 |
atgcattaatcaccacatcttctcatctatctggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaa |
13140123 |
T |
|
| Q |
116 |
cagataaatttttggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggaccaattgttacctaagaaattggata |
215 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||| | ||| | ||||||||||| ||||||||||| || || ||||||||||||| ||||| | |
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| T |
13140122 |
caaataaatttttggtcagactcttggtgtggacagattcttgctgaaacttacaacgtgcatgatcatatgcttcagctgttacctaagaagttggaga |
13140023 |
T |
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| Q |
216 |
gctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
267 |
Q |
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||| || | ||||||| |||||| || |||||||| ||||||||| |||| |
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| T |
13140022 |
actatatcagcaatcacaattggaacatttcagaagaattgaatcaaaactt |
13139971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 24558922 - 24558671
Alignment:
| Q |
16 |
atgcatcactcatcacatctcctcatctatttggagtggagttaaggctgaatttcatgttatcaaggataattgttcttggattgttggtgatggaaaa |
115 |
Q |
| |
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|||||| | ||| ||||||| ||||||||| |||||||||||||| | ||||||||| ||||||| | | || || |||||||| |||||| |||| ||| |
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| T |
24558922 |
atgcattaatcaccacatcttctcatctatctggagtggagttaaaggtgaatttcaagttatcatgaacaactgctcttggatagttggtaatgggaaa |
24558823 |
T |
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| Q |
116 |
cagataaatttttggtcagactcttggtgtagacaggtgcttccacaaacttacaacttgcatgatcatttggaccaattgttacctaagaaattggata |
215 |
Q |
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|| ||||||||||||||||||||||||||| ||||| | ||| | ||||||||||| ||||||||||| | || ||||||||||||| ||||| | |
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| T |
24558822 |
caaataaatttttggtcagactcttggtgtggacagattcttgctgaaacttacaacgtgcatgatcatacgcttcagctgttacctaagaagttggaga |
24558723 |
T |
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| Q |
216 |
gctacattactaatcacacttggaatatatcagaagatttgaatcaatactt |
267 |
Q |
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||| || | ||||||| |||||| || |||||||| ||||||||| |||| |
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| T |
24558722 |
actatatcagcaatcacaattggaacatttcagaagaattgaatcaaaactt |
24558671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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