View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_4 (Length: 537)
Name: NF18415_low_4
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 43939528 - 43939976
Alignment:
| Q |
1 |
aataagggtgttaccaccactactacttgaaagaatcttggagaaaaatcctgtatttggcataagcttcggcagcctaacaatctttgcctgttaatgg |
100 |
Q |
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| T |
43939528 |
aataagggtgttaccaccactactacttgaaagaatcttggagaaaaatcctgtctttggcataagcttcggcagcc-aacaatctttgcctgttaatgg |
43939626 |
T |
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| Q |
101 |
atttcaagaacatatggtcatacttggaatttgaattctttaaagagagtaaagtgtgnnnnnnnnnnnnnnnnntcgattattataatttaacaatttc |
200 |
Q |
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| T |
43939627 |
atttcaagaacatatggccatatttggaatttgaattctttaaagagagtaaagtgtgaaaagaaaagaaaaaaatcaattattataatttaacaatttc |
43939726 |
T |
|
| Q |
201 |
gagattatttgttaagttgtatatacaatatctactgttaatttattaattaattgttgatattatttattttacactttaaactttaaaataagttgtt |
300 |
Q |
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| T |
43939727 |
gagatt---tgttaagttgtatatacaatatctactgttaatttattaattaattgttgatattatttattttacactttaaactttaaaataagttgtt |
43939823 |
T |
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| Q |
301 |
caatttagagtagtaggatatgagtatttgagacatataatttaagagcgcatttttcacatagtctaatttcaaaa---tatagttgacgtgttggccg |
397 |
Q |
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| T |
43939824 |
cactttagagtagtaggatatgagtatttgagacatataattgaagagcgcatttttcacatagcctaatttcaaaactgtatagttgacgagttggccg |
43939923 |
T |
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| Q |
398 |
aattcacaacactataaagtccgggtattgaagaaatatatttggttatttga |
450 |
Q |
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| T |
43939924 |
aattcacaacactataaagtccgggtattgaagaaatatatttggttatttga |
43939976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 520
Target Start/End: Original strand, 43940008 - 43940046
Alignment:
| Q |
482 |
aaacataatgtatgaaccatatattacaaaccccaaaac |
520 |
Q |
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| T |
43940008 |
aaacataatgtatgaaccatatattacaaaccccaaaac |
43940046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 9001175 - 9001213
Alignment:
| Q |
245 |
attaattaattgttgatattatttattttacactttaaa |
283 |
Q |
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| T |
9001175 |
attaattaattgttgatattgttcattttacactttaaa |
9001213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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