View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_47 (Length: 237)
Name: NF18415_low_47
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24947112 - 24947332
Alignment:
| Q |
1 |
aatatagttaatcaaacagattatccttttctatctgaagatttccatgatgacagaataaattatcaacccagcacaacaaggaacaaggacaaatacc |
100 |
Q |
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| T |
24947112 |
aatatagttaatctaacagattatccttctctatctgaagatttccatgatgacagaataaattatcaacccagcacagcaaggaacaaggacaaatacc |
24947211 |
T |
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| Q |
101 |
aacaagaaaaagttccaaatacaagaacatgacgatgccatatacataaacactagagaatcaaataaataagtactattgaaaggtataagtaaaacat |
200 |
Q |
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| T |
24947212 |
aacaagaaaaagttccaaatacaagaacatgacgatgccatatacataaacactagggaatcaaataaataagtactattgaaagctataagtaaaacat |
24947311 |
T |
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| Q |
201 |
taacaagtatatggaaattgg |
221 |
Q |
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|||||||||| |||||||||| |
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| T |
24947312 |
taacaagtatgtggaaattgg |
24947332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 24942619 - 24942738
Alignment:
| Q |
75 |
cacaacaaggaacaaggacaaataccaacaagaaaaagttccaaatacaagaacatgacgatgccatatacataaacactagagaatcaaataaataagt |
174 |
Q |
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||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
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| T |
24942619 |
cacaataagaaacaaggatggataccaacaaggaaaaattccaaatacaagaacatgaaattgccatatatataaacactaaagaatcaaataaataagt |
24942718 |
T |
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| Q |
175 |
actattgaaaggtataagta |
194 |
Q |
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||||||||||| | |||||| |
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| T |
24942719 |
actattgaaagttgtaagta |
24942738 |
T |
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