View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_48 (Length: 236)
Name: NF18415_low_48
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 42528453 - 42528671
Alignment:
| Q |
2 |
tgaataatcaaacgatgtacaatagacaaaacaacttcacactcaaacgacaaaatcatgaagnnnnnnntacgtgaggnnnnnnncattctatatcaat |
101 |
Q |
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| T |
42528453 |
tgaaaaatcaaacgatgtacgatagacaaaacaacttcacactcaaacgacaaaatcatgaaaacaaaaatacgtgagaaaaaaaacattatatatcaat |
42528552 |
T |
|
| Q |
102 |
atgttagaaaccatttatttagattaaaagatgatg-nnnnnnnntgtaaaatgggtgatttcaggtcaataaataattcaaaactaccgtcacttacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||| || ||||||||||| |
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| T |
42528553 |
atgttagaaaccatttatttagattaaaagatgatgaaaaaaaaatgtaaaatgagtgatttcagaccaacaaataattcaaaaccacagtcacttacga |
42528652 |
T |
|
| Q |
201 |
atgataaagatggagaaga |
219 |
Q |
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||||||||||||||||||| |
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| T |
42528653 |
atgataaagatggagaaga |
42528671 |
T |
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