View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_50 (Length: 230)
Name: NF18415_low_50
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 37792936 - 37793130
Alignment:
| Q |
18 |
agaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaagtggattctcttgcataacaacaga |
117 |
Q |
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| T |
37792936 |
agaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacaga |
37793035 |
T |
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| Q |
118 |
aaatttcgcttccactatatcacatgaaaattcagtttttgatggcagtgaacttccggttatggatgcattcatagagactgtgagtgaatttt |
212 |
Q |
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| T |
37793036 |
aaatttcgcttccactatatcacatgaaaattcagtttttgatggtagtgaacttccgtttatggatgcattcatggagactgtgagtgaatttt |
37793130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37793404 - 37793534
Alignment:
| Q |
18 |
agaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaagtggattctcttgcataacaacaga |
117 |
Q |
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| T |
37793404 |
agaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatgga |
37793503 |
T |
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| Q |
118 |
aaatttcgcttccactatatcacatgaaaat |
148 |
Q |
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| T |
37793504 |
aaatgttacttccacaatatcacatgaaaat |
37793534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 37809317 - 37809388
Alignment:
| Q |
38 |
gagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaagtggattctcttgcata |
109 |
Q |
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| T |
37809317 |
gagaacaacagtgatttcaatattacgagtccaccatcttcacaaccatctacaagtgcatcctcttgcata |
37809388 |
T |
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