View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_56 (Length: 219)
Name: NF18415_low_56
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 52984879 - 52985065
Alignment:
| Q |
18 |
attattattgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattc |
117 |
Q |
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| T |
52984879 |
attattattgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattc |
52984978 |
T |
|
| Q |
118 |
tcacaggtgacacattagatgaaaaaatacaaggggcgagaagagactagattcataataataataaatagtagtgactcacctatg |
204 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52984979 |
tcacaggtgacacatgagatgaaaaaatacaaggggcgagaagagactagattcataataataataaatagtagtgactcacctatg |
52985065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 55658397 - 55658557
Alignment:
| Q |
25 |
ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg |
124 |
Q |
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||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
55658397 |
ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg |
55658496 |
T |
|
| Q |
125 |
tgacaca---ttagatga-aaaaatacaaggggcgagaagagactagattcataataataa |
181 |
Q |
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||||||| | |||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
55658497 |
tgacacatattgagatgacaaaaagacaaggggtgagaagagactagattcataataataa |
55658557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 55636379 - 55636232
Alignment:
| Q |
26 |
tgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggt |
125 |
Q |
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||||||||| |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| |
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| T |
55636379 |
tgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggt |
55636280 |
T |
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| Q |
126 |
gacacattagatgaaaaaatacaaggggcgagaagagactagattcat |
173 |
Q |
| |
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| ||||| |||||| | |||||||| | ||||||||||||||||||| |
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| T |
55636279 |
ggcacatgagatgacataatacaagcagtgagaagagactagattcat |
55636232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 55620047 - 55620193
Alignment:
| Q |
25 |
ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg |
124 |
Q |
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||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
55620047 |
ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg |
55620146 |
T |
|
| Q |
125 |
tgacaca---ttagatga-aaaaatacaaggggcgagaagagactag |
167 |
Q |
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||||||| | |||||| ||||| |||||||| ||||||||||||| |
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| T |
55620147 |
tgacacatattgagatgacaaaaagacaaggggtgagaagagactag |
55620193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 55627351 - 55627497
Alignment:
| Q |
25 |
ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg |
124 |
Q |
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|
||||| || ||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
55627351 |
ttgtggttttggatcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacagg |
55627450 |
T |
|
| Q |
125 |
tgacaca---ttagatga-aaaaatacaaggggcgagaagagactag |
167 |
Q |
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||||||| | |||||| ||||| |||||||| ||||||||||||| |
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| T |
55627451 |
tgacacatattgagatgacaaaaagacaaggggtgagaagagactag |
55627497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 51316088 - 51315974
Alignment:
| Q |
25 |
ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacagg |
124 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
51316088 |
ttgtgatcatgggtcaacaggctcaaaaggcattggagtgaaccatgattgataacaacctgacaaaaagagccccaccaaatcaggttattcaaacagg |
51315989 |
T |
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| Q |
125 |
tgacacattagatga |
139 |
Q |
| |
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|||||||| |||||| |
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| T |
51315988 |
tgacacatgagatga |
51315974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 55664640 - 55664748
Alignment:
| Q |
37 |
gtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtgacacattaga |
136 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||| ||| |
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| T |
55664640 |
gtcaacagactcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtctcaccaaatcaagttattctcac--gtgacacatgaga |
55664737 |
T |
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| Q |
137 |
tgaaaaaatac |
147 |
Q |
| |
|
||| ||||||| |
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| T |
55664738 |
tgacaaaatac |
55664748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 54861476 - 54861547
Alignment:
| Q |
36 |
ggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat |
107 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54861476 |
ggtcaacaggctcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat |
54861547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 54628132 - 54628043
Alignment:
| Q |
33 |
atgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcaca |
122 |
Q |
| |
|
|||||||| |||||||||||| |||| |||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
54628132 |
atgggtcaacaggctcaaaagacatgggagtaaaccatgattgacaatagcctgacaaaaagaatcctaccaaatcaggtaattctcaca |
54628043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 3671556 - 3671616
Alignment:
| Q |
27 |
gtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctga |
87 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
3671556 |
gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgacaatagcctga |
3671616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 9890703 - 9890561
Alignment:
| Q |
27 |
gtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggtg |
126 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
9890703 |
gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgagaatagcctgacaaaaagagtcccacaaaatcaggtaattctcacaagtg |
9890604 |
T |
|
| Q |
127 |
acacattaga-tgaaaaaatacaaggggcgagaagagactaga |
168 |
Q |
| |
|
|||||| ||| ||| | ||||||||||| |||||||||||||| |
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|
| T |
9890603 |
acacatgagattgacataatacaaggggtgagaagagactaga |
9890561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 13402758 - 13402638
Alignment:
| Q |
25 |
ttgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtccc-accaaatcaggtaattctcacag |
123 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||| ||| ||||| || |
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| T |
13402758 |
ttgtgattatgggtcaacaggctcaaaagacatgggagtgaaccatgaccaataatagcctgacaaaaagagtcccaacaaaatcagataactctcaaag |
13402659 |
T |
|
| Q |
124 |
gtgacacattagatgaaaaaa |
144 |
Q |
| |
|
|||| ||| |||||| |||| |
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|
| T |
13402658 |
gtgatgcatgagatgacaaaa |
13402638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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