View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18415_low_59 (Length: 204)

Name: NF18415_low_59
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18415_low_59
NF18415_low_59
[»] chr8 (8 HSPs)
chr8 (88-184)||(38594306-38594402)
chr8 (15-63)||(38594423-38594471)
chr8 (15-49)||(44019569-44019603)
chr8 (19-49)||(11709010-11709040)
chr8 (16-49)||(5728559-5728592)
chr8 (15-43)||(23763300-23763328)
chr8 (15-43)||(29652238-29652266)
chr8 (16-44)||(44084283-44084311)
[»] chr6 (2 HSPs)
chr6 (15-50)||(2213317-2213352)
chr6 (17-49)||(13496138-13496170)
[»] chr4 (3 HSPs)
chr4 (19-62)||(13434895-13434938)
chr4 (17-49)||(40070975-40071007)
chr4 (17-49)||(20403175-20403207)
[»] chr5 (5 HSPs)
chr5 (15-46)||(18278269-18278300)
chr5 (14-44)||(32339754-32339784)
chr5 (19-49)||(32806383-32806413)
chr5 (17-62)||(2143155-2143200)
chr5 (19-51)||(19759953-19759985)
[»] chr2 (6 HSPs)
chr2 (15-45)||(43356553-43356583)
chr2 (19-52)||(4079088-4079121)
chr2 (15-43)||(4531431-4531459)
chr2 (17-49)||(7537132-7537164)
chr2 (15-43)||(23250333-23250361)
chr2 (15-43)||(32458322-32458350)
[»] chr1 (2 HSPs)
chr1 (15-45)||(17221531-17221561)
chr1 (15-43)||(30795721-30795749)
[»] chr7 (2 HSPs)
chr7 (15-44)||(39280830-39280859)
chr7 (15-43)||(29237570-29237598)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-49)||(223684-223716)
[»] chr3 (2 HSPs)
chr3 (19-59)||(2662116-2662156)
chr3 (15-43)||(13800687-13800715)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 38594402 - 38594306
Alignment:
Q  88 tcgtataatatttaatcaattactctctacaaattcgtcaacattaaacgagtaaacggtagaaaagtaacacaaaaaatcaaccaaatttcacatg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38594402 tcgtataatatttaatcaattactctctacaaattcgtcaacattaaacgagtaaacggtagaaaagtaacacaaaaaatcaaccaaatttcacatg 38594306  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 38594471 - 38594423
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccgaagttaaaaatccggtcat 63  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  38594471 aagaacaatgcataatatatgtaaggtccggagttaaaaatccggtcat 38594423  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 44019569 - 44019603
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||||||||||    
T  44019569 aagaacaatgcataatatatgcaaggtccgaagtt 44019603  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 11709010 - 11709040
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||||||    
T  11709010 acaatgcataatatatgcaaggtccgaagtt 11709040  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 5728559 - 5728592
Alignment:
Q  16 agaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||| |||||||||    
T  5728559 agaacaatgcataatatatgcaagctccgaagtt 5728592  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 23763328 - 23763300
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  23763328 aagaacaatgcataatatatgcaaggtcc 23763300  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 29652238 - 29652266
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  29652238 aagaacaatgcataatatatgcaaggtcc 29652266  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 44084311 - 44084283
Alignment:
Q  16 agaacaatgcataatatatgcaaggtccg 44  Q
    |||||||||||||||||||||||||||||    
T  44084311 agaacaatgcataatatatgcaaggtccg 44084283  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 2213317 - 2213352
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccgaagtta 50  Q
    ||||||||||||||||||||||||||||||||||||    
T  2213317 aagaacaatgcataatatatgcaaggtccgaagtta 2213352  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 13496138 - 13496170
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||| ||||    
T  13496138 gaacaatgcataatatatgcaaggtccggagtt 13496170  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 13434938 - 13434895
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagttaaaaatccggtca 62  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  13434938 acaatgcataaaatatgcaaggtccgaagttaaaactccggtca 13434895  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 40071007 - 40070975
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||||||||    
T  40071007 gaacaatgcataatatatgcaaggtccgaagtt 40070975  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 20403207 - 20403175
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||| ||||||    
T  20403207 gaacaatgcataatatatgcaaggtctgaagtt 20403175  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 18278300 - 18278269
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccgaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  18278300 aagaacaatgcataatatatgcaaggtccgaa 18278269  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 32339754 - 32339784
Alignment:
Q  14 gaagaacaatgcataatatatgcaaggtccg 44  Q
    |||||||||||||||||||||||||||||||    
T  32339754 gaagaacaatgcataatatatgcaaggtccg 32339784  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 32806383 - 32806413
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||||||    
T  32806383 acaatgcataatatatgcaaggtccgaagtt 32806413  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 2143155 - 2143200
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagttaaaaatccggtca 62  Q
    |||||||| |||||||||||||||||||||||| ||| || |||||    
T  2143155 gaacaatgtataatatatgcaaggtccgaagttcaaactctggtca 2143200  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 19759953 - 19759985
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagttaa 51  Q
    ||||||||||||||||||||||||||| |||||    
T  19759953 acaatgcataatatatgcaaggtccgaggttaa 19759985  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 43356583 - 43356553
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccga 45  Q
    |||||||||||||||||||||||||||||||    
T  43356583 aagaacaatgcataatatatgcaaggtccga 43356553  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 4079121 - 4079088
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagttaaa 52  Q
    ||||||||||||||||||||||||||| ||||||    
T  4079121 acaatgcataatatatgcaaggtccgacgttaaa 4079088  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 4531431 - 4531459
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  4531431 aagaacaatgcataatatatgcaaggtcc 4531459  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 7537132 - 7537164
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagtt 49  Q
    |||||||||||||||||||||||||||| ||||    
T  7537132 gaacaatgcataatatatgcaaggtccggagtt 7537164  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 23250361 - 23250333
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  23250361 aagaacaatgcataatatatgcaaggtcc 23250333  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 32458322 - 32458350
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  32458322 aagaacaatgcataatatatgcaaggtcc 32458350  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 17221561 - 17221531
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccga 45  Q
    |||||||||||||||||||||||||||||||    
T  17221561 aagaacaatgcataatatatgcaaggtccga 17221531  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 30795721 - 30795749
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  30795721 aagaacaatgcataatatatgcaaggtcc 30795749  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 39280859 - 39280830
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtccg 44  Q
    ||||||||||||||||||||||||||||||    
T  39280859 aagaacaatgcataatatatgcaaggtccg 39280830  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 29237598 - 29237570
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  29237598 aagaacaatgcataatatatgcaaggtcc 29237570  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 223716 - 223684
Alignment:
Q  17 gaacaatgcataatatatgcaaggtccgaagtt 49  Q
    ||||||||||||||||||||| |||||||||||    
T  223716 gaacaatgcataatatatgcatggtccgaagtt 223684  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 2662116 - 2662156
Alignment:
Q  19 acaatgcataatatatgcaaggtccgaagttaaaaatccgg 59  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  2662116 acaatgcataatatatgcaaggttcgaagtttaaactccgg 2662156  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 13800687 - 13800715
Alignment:
Q  15 aagaacaatgcataatatatgcaaggtcc 43  Q
    |||||||||||||||||||||||||||||    
T  13800687 aagaacaatgcataatatatgcaaggtcc 13800715  T

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