View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18415_low_6 (Length: 483)
Name: NF18415_low_6
Description: NF18415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18415_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 70 - 463
Target Start/End: Original strand, 8673843 - 8674240
Alignment:
| Q |
70 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatat |
169 |
Q |
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| T |
8673843 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacttgaatgaagagaaaaacaataacccttatcgtcttggcttcccatat |
8673942 |
T |
|
| Q |
170 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctgnnnnnnnn----tcaaattgtgtttaccctttcaaaatttaataaaaaa |
265 |
Q |
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| T |
8673943 |
ttgaaaattgctacaaagctgatccaacttcaatatccaaatcaaatcctgaaaaaaaaaaaatcaaattgtttttaccctttcaaaatttaataaaaaa |
8674042 |
T |
|
| Q |
266 |
-tcaaaggaagtgaaatgggtttgtgggtaaaagagaattcgatccaactactgaatgaaactccagttaatcgggctccggtggtgaaatatcggatct |
364 |
Q |
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| T |
8674043 |
atcgaaggaagtgaaatgggtttgtgggtaaaagagaattcgatccaaccactgaatgaaactccggttaatcgggctccggtggtggaatatcggatct |
8674142 |
T |
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| Q |
365 |
gaaggattccgacgagatcaaatcataatgatttttatcacacttatacgctattaaactatgtaagtatgatgacatgattcaatatagtgttcagta |
463 |
Q |
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| T |
8674143 |
-taggattccgacgagatcgaaacataatggtttttatcacacttttacgctattaaactatatcagtatgatgacatgattcaatatagtgttcagta |
8674240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 70 - 463
Target Start/End: Complemental strand, 44309318 - 44308921
Alignment:
| Q |
70 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatat |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
44309318 |
aattcaacaacaccgatggccacctctgccatatttgaaaaagttgaaacacatgaatgaagagaaaaacaataacccttatggtcttagcttcccatat |
44309219 |
T |
|
| Q |
170 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctgnnnnnnnn----tcaaattgtgtttaccctttcaaaatttaataaaaaa |
265 |
Q |
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| T |
44309218 |
ttgaaaattgctacaaagctgatccaacttcaatatcgaaatcaaatcctgaaaaaaaaaaaatcaaattgtttttaccctttcaaaatttaataaaaaa |
44309119 |
T |
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| Q |
266 |
-tcaaaggaagtgaaatgggtttgtgggtaaaagagaattcgatccaactactgaatgaaactccagttaatcgggctccggtggtgaaatatcggatct |
364 |
Q |
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| T |
44309118 |
atcgaaggaagtgaaatgggtttgtgggtaaaagagaatttgatccaaccactgaatgaaactccggttaatcgggcttcgatggtggaatatcggatct |
44309019 |
T |
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| Q |
365 |
gaaggattccgacgagatcaaatcataatgatttttatcacacttatacgctattaaactatgtaagtatgatgacatgattcaatatagtgttcagta |
463 |
Q |
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| T |
44309018 |
g-aggattccgacgagatcgaaacataatggtttttatcacacttttacgctattaaactatgtcagtatgatgacatgattcaatatagtgttcagta |
44308921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 44193779 - 44193688
Alignment:
| Q |
111 |
agttgaaacacatgaatgaagagaagaacaataacccttatcgtcttggcttcccatatttgaaaattgctacaaagctgatccaacttcaa |
202 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
44193779 |
agttgaaacgcatgaatgaagagaagaacaataacccttaccgttttggcttcccatatttgagaattgctacaaagctcttccaacttcaa |
44193688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 44193543 - 44193459
Alignment:
| Q |
267 |
caaaggaagtgaaatgggtttgtgggtaaaagagaattcgatccaactactgaatgaaactccagttaatcgggctccggtggtg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||| ||||||||||| |
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| T |
44193543 |
caaaggaagtgaaatgggtttgtgggtaaaagagaatccgatccaacgggtgaatgaaactccggggaatcggactccggtggtg |
44193459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 446
Target Start/End: Original strand, 23574360 - 23574459
Alignment:
| Q |
347 |
tggtgaaatatcggatctgaaggattccgacgagatcaaatcataatgatttt-tatcacacttatacgctattaaactatgtaagtatgatgacatgat |
445 |
Q |
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||||| |||||||||||||| |||||||||||||||| ||||| |||| |||| |||||||||| |||||||||||||||||| ||||||||| |||||| |
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| T |
23574360 |
tggtggaatatcggatctga-ggattccgacgagatcgaatcagaatggttttttatcacacttttacgctattaaactatgtcagtatgatggcatgat |
23574458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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