View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18416_high_9 (Length: 219)
Name: NF18416_high_9
Description: NF18416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18416_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 9298085 - 9297885
Alignment:
| Q |
3 |
atcaagtggataatcaaatgaagggatgattgacatatagatagatcatagatgcttgtttcattcgctataaagctaataaggccaaacttgcttgctc |
102 |
Q |
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| T |
9298085 |
atcaagtggataatcaaatgaagggatgattgacatatagatagatcatagatgcttgtttcattcgctataaagctaataaggccaaacttgcttgctc |
9297986 |
T |
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| Q |
103 |
aataagctcgcgttgtgtttcggagagaaaaggaggaggcggaacaagccaacttgatagacatatagtaagcaactattttgatgttccacgttttata |
202 |
Q |
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| T |
9297985 |
aataagctcgcgttgtgtttcggagagaaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttata |
9297886 |
T |
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| Q |
203 |
t |
203 |
Q |
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| T |
9297885 |
t |
9297885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 9286754 - 9286557
Alignment:
| Q |
3 |
atcaagtggataatcaaatgaagggatgattgacatatagatagatcatagatgcttgtttcattcgctataaagctaataaggccaaacttgcttgctc |
102 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
9286754 |
atcaagtggattatcaaatgctgggatgattgacatatagatagatcatagatgcttgtttcattctctataaagctaataaggcc-aacttgcttgctc |
9286656 |
T |
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| Q |
103 |
aataagctcgcgttgtgtttcggagagaaaaggaggaggcggaacaagccaacttgatagacatatagtaagcaactattttgatgttccacgttttata |
202 |
Q |
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| T |
9286655 |
aatatgcccgcaaagtgtttcggagagaaaaggaggaggcggaacaagccaacttgatagac--attgtaagcaactattttgatgttccactttttata |
9286558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 7724237 - 7724120
Alignment:
| Q |
54 |
atgcttgtttcattcgctataaagctaataaggccaaacttgcttgctcaataagctcgcgttgtgtttcggagagaaaaggaggaggcggaacaagcca |
153 |
Q |
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|||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||| || ||| ||| ||||| ||| || ||||||||||||||| |
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| T |
7724237 |
atgcttgtttgattttctataaagctaataaggccat-cttgcttcctcaagaagcttacgaagtgattccgagagtaaaagacaaggcggaacaagcca |
7724139 |
T |
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| Q |
154 |
acttgatagacatatagtaa |
173 |
Q |
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| T |
7724138 |
acttgatagac-tatagtaa |
7724120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 5888380 - 5888307
Alignment:
| Q |
80 |
aataaggccaaacttgcttgctcaataagctcgcgttgtgtttcggagagaaaaggaggaggcggaacaagccaa |
154 |
Q |
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||||||||||| ||||||||||| | ||||| ||| |||||| |||||| ||||||||| || ||||||||||| |
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| T |
5888380 |
aataaggccaa-cttgcttgctcgagaagcttgcgaagtgtttaggagagtaaaggaggaagcagaacaagccaa |
5888307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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